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grofte/TF_Dataset_cache.ipynb

Created July 2, 2021 08:05
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Example of Tensorflow reading an entire dataset into memory before caching it on disk
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TF_Dataset_cache.ipynb
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "8giNWiR6eBG_",
"outputId": "ed04dab7-3c1f-4f4b-d129-1e8d02f0596c",
"scrolled": true
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Requirement already up-to-date: tensorflow-datasets in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (4.3.0)\n",
"Requirement already satisfied, skipping upgrade: six in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (1.15.0)\n",
"Requirement already satisfied, skipping upgrade: future in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (0.18.2)\n",
"Requirement already satisfied, skipping upgrade: tensorflow-metadata in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (1.1.0)\n",
"Requirement already satisfied, skipping upgrade: promise in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (2.3)\n",
"Requirement already satisfied, skipping upgrade: numpy in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (1.19.5)\n",
"Requirement already satisfied, skipping upgrade: protobuf>=3.12.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (3.17.3)\n",
"Requirement already satisfied, skipping upgrade: importlib-resources; python_version < \"3.9\" in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (5.2.0)\n",
"Requirement already satisfied, skipping upgrade: absl-py in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (0.10.0)\n",
"Requirement already satisfied, skipping upgrade: attrs>=18.1.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (20.2.0)\n",
"Requirement already satisfied, skipping upgrade: tqdm in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (4.61.1)\n",
"Requirement already satisfied, skipping upgrade: requests>=2.19.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (2.24.0)\n",
"Requirement already satisfied, skipping upgrade: termcolor in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (1.1.0)\n",
"Requirement already satisfied, skipping upgrade: dill in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-datasets) (0.3.4)\n",
"Requirement already satisfied, skipping upgrade: googleapis-common-protos<2,>=1.52.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tensorflow-metadata->tensorflow-datasets) (1.53.0)\n",
"Requirement already satisfied, skipping upgrade: zipp>=3.1.0; python_version < \"3.10\" in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from importlib-resources; python_version < \"3.9\"->tensorflow-datasets) (3.3.0)\n",
"Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests>=2.19.0->tensorflow-datasets) (2.10)\n",
"Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests>=2.19.0->tensorflow-datasets) (2020.12.5)\n",
"Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests>=2.19.0->tensorflow-datasets) (1.25.10)\n",
"Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests>=2.19.0->tensorflow-datasets) (3.0.4)\n"
]
}
],
"source": [
"!pip install -U tensorflow-datasets"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "UtU87Yy-gSjZ",
"outputId": "664e9f12-a505-4c89-ad19-02a28583c5aa"
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Collecting tf-nightly\n",
" Downloading tf_nightly-2.7.0.dev20210630-cp38-cp38-manylinux2010_x86_64.whl (459.5 MB)\n",
"\u001b[K |████████████████████████████████| 459.5 MB 17 kB/s s eta 0:00:01 |███████▌ | 107.0 MB 13.3 MB/s eta 0:00:27 |███████████▊ | 168.7 MB 9.0 MB/s eta 0:00:33 | 200.2 MB 10.5 MB/s eta 0:00:25��██ | 201.0 MB 10.5 MB/s eta 0:00:25 |██████████████████▊ | 268.3 MB 16.2 MB/s eta 0:00:12 |███████████████████████ | 331.3 MB 2.3 MB/s eta 0:00:55 |████████████████████████▋ | 353.7 MB 14.9 MB/s eta 0:00:08 |███████████████████████████████ | 444.4 MB 15.5 MB/s eta 0:00:01 |███████████████████████████████▌| 452.1 MB 17.5 MB/s eta 0:00:01\n",
"\u001b[?25hRequirement already satisfied: opt-einsum~=3.3.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (3.3.0)\n",
"Requirement already satisfied: numpy~=1.19.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.19.5)\n",
"Requirement already satisfied: protobuf>=3.9.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (3.17.3)\n",
"Requirement already satisfied: absl-py~=0.10 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (0.10.0)\n",
"Requirement already satisfied: flatbuffers~=1.12.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.12)\n",
"Collecting keras-nightly~=2.6.0.dev\n",
" Downloading keras_nightly-2.6.0.dev2021062500-py2.py3-none-any.whl (1.3 MB)\n",
"\u001b[K |████████████████████████████████| 1.3 MB 21.3 MB/s eta 0:00:01\n",
"\u001b[?25hRequirement already satisfied: astunparse~=1.6.3 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.6.3)\n",
"Requirement already satisfied: typing-extensions~=3.7.4 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (3.7.4.3)\n",
"Collecting clang~=5.0\n",
" Downloading clang-5.0.tar.gz (30 kB)\n",
"Collecting tb-nightly~=2.6.0.a\n",
" Downloading tb_nightly-2.6.0a20210701-py3-none-any.whl (5.5 MB)\n",
"\u001b[K |████████████████████████████████| 5.5 MB 15.3 MB/s eta 0:00:01\n",
"\u001b[?25hRequirement already satisfied: h5py~=3.1.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (3.1.0)\n",
"Requirement already satisfied: six~=1.15.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.15.0)\n",
"Requirement already satisfied: wheel~=0.35 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (0.35.1)\n",
"Collecting grpcio<2.0,>=1.37.0\n",
" Downloading grpcio-1.38.1-cp38-cp38-manylinux2014_x86_64.whl (4.2 MB)\n",
"\u001b[K |████████████████████████████████| 4.2 MB 17.4 MB/s eta 0:00:01\n",
"\u001b[?25hRequirement already satisfied: wrapt~=1.12.1 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.12.1)\n",
"Requirement already satisfied: keras-preprocessing~=1.1.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.1.2)\n",
"Collecting tf-estimator-nightly~=2.6.0.dev\n",
" Downloading tf_estimator_nightly-2.6.0.dev2021062501-py2.py3-none-any.whl (463 kB)\n",
"\u001b[K |████████████████████████████████| 463 kB 20.4 MB/s eta 0:00:01\n",
"\u001b[?25hRequirement already satisfied: google-pasta~=0.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (0.2.0)\n",
"Requirement already satisfied: termcolor~=1.1.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (1.1.0)\n",
"Requirement already satisfied: gast==0.4.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tf-nightly) (0.4.0)\n",
"Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (0.4.1)\n",
"Requirement already satisfied: werkzeug>=0.11.15 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (1.0.1)\n",
"Requirement already satisfied: requests<3,>=2.21.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (2.24.0)\n",
"Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (1.7.0)\n",
"Requirement already satisfied: markdown>=2.6.8 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (3.3.1)\n",
"Requirement already satisfied: setuptools>=41.0.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (50.3.0.post20201006)\n",
"Requirement already satisfied: google-auth<2,>=1.6.3 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (1.22.1)\n",
"Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from tb-nightly~=2.6.0.a->tf-nightly) (0.6.1)\n",
"Requirement already satisfied: requests-oauthlib>=0.7.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tb-nightly~=2.6.0.a->tf-nightly) (1.3.0)\n",
"Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests<3,>=2.21.0->tb-nightly~=2.6.0.a->tf-nightly) (1.25.10)\n",
"Requirement already satisfied: chardet<4,>=3.0.2 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests<3,>=2.21.0->tb-nightly~=2.6.0.a->tf-nightly) (3.0.4)\n",
"Requirement already satisfied: certifi>=2017.4.17 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests<3,>=2.21.0->tb-nightly~=2.6.0.a->tf-nightly) (2020.12.5)\n",
"Requirement already satisfied: idna<3,>=2.5 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests<3,>=2.21.0->tb-nightly~=2.6.0.a->tf-nightly) (2.10)\n",
"Requirement already satisfied: cachetools<5.0,>=2.0.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from google-auth<2,>=1.6.3->tb-nightly~=2.6.0.a->tf-nightly) (4.1.1)\n",
"Requirement already satisfied: pyasn1-modules>=0.2.1 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from google-auth<2,>=1.6.3->tb-nightly~=2.6.0.a->tf-nightly) (0.2.8)\n",
"Requirement already satisfied: rsa<5,>=3.1.4; python_version >= \"3.5\" in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from google-auth<2,>=1.6.3->tb-nightly~=2.6.0.a->tf-nightly) (4.6)\n",
"Requirement already satisfied: oauthlib>=3.0.0 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tb-nightly~=2.6.0.a->tf-nightly) (3.1.0)\n",
"Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in /home/mog/anaconda3/envs/preacc/lib/python3.8/site-packages (from pyasn1-modules>=0.2.1->google-auth<2,>=1.6.3->tb-nightly~=2.6.0.a->tf-nightly) (0.4.8)\n",
"Building wheels for collected packages: clang\n",
" Building wheel for clang (setup.py) ... \u001b[?25ldone\n",
"\u001b[?25h Created wheel for clang: filename=clang-5.0-py3-none-any.whl size=30705 sha256=2770b617261179a4a9c100b10454ea7d4c40d4292359db2b8a0ab56bb83743b7\n",
" Stored in directory: /home/mog/.cache/pip/wheels/f1/60/77/22b9b5887bd47801796a856f47650d9789c74dc3161a26d608\n",
"Successfully built clang\n",
"Installing collected packages: keras-nightly, clang, grpcio, tb-nightly, tf-estimator-nightly, tf-nightly\n",
" Attempting uninstall: keras-nightly\n",
" Found existing installation: keras-nightly 2.5.0.dev2021032900\n",
" Uninstalling keras-nightly-2.5.0.dev2021032900:\n",
" Successfully uninstalled keras-nightly-2.5.0.dev2021032900\n",
" Attempting uninstall: grpcio\n",
" Found existing installation: grpcio 1.34.1\n",
" Uninstalling grpcio-1.34.1:\n",
" Successfully uninstalled grpcio-1.34.1\n",
"\u001b[31mERROR: After October 2020 you may experience errors when installing or updating packages. This is because pip will change the way that it resolves dependency conflicts.\n",
"\n",
"We recommend you use --use-feature=2020-resolver to test your packages with the new resolver before it becomes the default.\n",
"\n",
"tensorflow 2.5.0 requires grpcio~=1.34.0, but you'll have grpcio 1.38.1 which is incompatible.\n",
"tensorflow 2.5.0 requires keras-nightly~=2.5.0.dev, but you'll have keras-nightly 2.6.0.dev2021062500 which is incompatible.\u001b[0m\n",
"Successfully installed clang-5.0 grpcio-1.38.1 keras-nightly-2.6.0.dev2021062500 tb-nightly-2.6.0a20210701 tf-estimator-nightly-2.6.0.dev2021062501 tf-nightly-2.7.0.dev20210630\n"
]
}
],
"source": [
"!pip install tf-nightly"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"id": "uobBbIhndMJi"
},
"outputs": [],
"source": [
"import tensorflow as tf\n",
"import tensorflow_datasets as tfds"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "4xdmZjitda0u",
"outputId": "0ba230c0-2681-40b9-c14d-bc5026379605"
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"4.3.0\n",
"2.7.0-dev20210630\n"
]
}
],
"source": [
"print(tfds.__version__)\n",
"print(tf.__version__)"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/",
"height": 725,
"referenced_widgets": [
"394941ef71464691b0731fc0f438f0b0",
"83bb78597aad4543828ae731bcaa38cc",
"f43db8fbab80479ca782b89a33ba38b7",
"6f7e5d122215402099bcb1a9273270e3",
"6ee3ed32fe2b4b34bff9afe95486def4",
"f4dacca398bd4e33b6b1ddc37bd01839",
"53cb5ce24c2a4babaf7c3d0b38f063e8",
"082fcdf3cb9542f79d4a89007578a863",
"22b2539962e64500afa545e31f3b4972",
"d1448dd51dd04332a55d31bb8087d334",
"aa2169c85d0e4c709c3412155bfc9502",
"257562c68ac4423998cde52881605a61",
"ec9d8bd05f3244ca90b5a784d1ea3de6",
"092b45805a4e434d9532f6f6014347c5",
"2c2c9064821d42b5a839c4f3f9bbbe62",
"f050d586fe3144b79209560f3790bee2",
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"4d32dfe5a22c4492bae25093af3d31c1",
"a6d50b209e5c400ead43adc01b8aa3da",
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"336397384e524baa899e0ec5803c35c2",
"a17b6caeac7c47a481cce85408a372c6",
"3c2500703697444db4a77a3e2a118256",
"233b03c3ba904203b51cabc7ef78be83",
"0dfd7c39d59e4434b8567988c89b1ed9",
"5e7bbca351ad490093a1ce24f96afe9e",
"1a445a6c231346dbb54138a243be7584",
"695af404125742048b8a699f1a3983e4"
]
},
"id": "vCu7iuzVdS6s",
"outputId": "8c82dcd0-cae6-42d4-f8a1-cb9504078e9d"
},
"outputs": [],
"source": [
"# This data set is too big to run in Colaboratory, ~30 GB\n",
"train = tfds.load(name=\"bair_robot_pushing_small:2.0.0\", split=\"train\",\n",
" shuffle_files=False, data_dir='./tensorflow_datasets')"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"id": "yE878kh3gNGm"
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"mkdir: cannot create directory ‘cache’: File exists\r\n"
]
}
],
"source": [
"!mkdir cache"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"id": "-XrW92Q2dtgi"
},
"outputs": [],
"source": [
"train = train.cache('./cache/train')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "sgtD06mWrY6u"
},
"outputs": [],
"source": [
"# We need to do some kind of operation over the data to trigger the caching\n",
"batch_size = 64\n",
"\n",
"n = train.batch(batch_size).reduce(0, lambda accum, _: accum + batch_size)\n",
"print(n)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"colab": {
"collapsed_sections": [],
"name": "TF_Dataset_cache.ipynb",
"provenance": []
},
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
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