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| { | |
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| "</style>\n", | |
| "<table border=\"1\" class=\"dataframe\">\n", | |
| " <thead>\n", | |
| " <tr style=\"text-align: right;\">\n", | |
| " <th></th>\n", | |
| " <th>gradient</th>\n", | |
| " <th>mad_m3s</th>\n", | |
| " <th>channel_width</th>\n", | |
| " <th>stream_order</th>\n", | |
| " <th>stream_order_parent</th>\n", | |
| " <th>stream_order_max</th>\n", | |
| " <th>model_spawning_cm</th>\n", | |
| " <th>model_spawning_pk</th>\n", | |
| " <th>edge_type</th>\n", | |
| " <th>geom</th>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>segmented_stream_id</th>\n", | |
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| ], | |
| "text/plain": [ | |
| " gradient mad_m3s channel_width stream_order \\\n", | |
| "segmented_stream_id \n", | |
| "354095772.0 0.0384 NaN 2.15 2 \n", | |
| "354108776.0 0.0000 NaN 2.41 2 \n", | |
| "354108776.11000 0.0534 NaN 2.41 2 \n", | |
| "354109435.0 0.0368 NaN 3.06 2 \n", | |
| "354115253.0 0.0795 NaN 4.77 2 \n", | |
| "... ... ... ... ... \n", | |
| "360887426.20262512 0.0000 NaN 38.09 6 \n", | |
| "360887426.20294588 0.0000 NaN 38.01 6 \n", | |
| "360887426.20417273 0.0187 NaN 38.01 6 \n", | |
| "360887426.20672573 0.0000 NaN 38.01 6 \n", | |
| "360887428.721000 0.0257 NaN 28.66 5 \n", | |
| "\n", | |
| " stream_order_parent stream_order_max model_spawning_cm \\\n", | |
| "segmented_stream_id \n", | |
| "354095772.0 NaN 2 True \n", | |
| "354108776.0 1.0 2 True \n", | |
| "354108776.11000 1.0 2 True \n", | |
| "354109435.0 NaN 2 True \n", | |
| "354115253.0 NaN 2 True \n", | |
| "... ... ... ... \n", | |
| "360887426.20262512 7.0 6 True \n", | |
| "360887426.20294588 7.0 6 True \n", | |
| "360887426.20417273 7.0 6 True \n", | |
| "360887426.20672573 7.0 6 True \n", | |
| "360887428.721000 NaN 5 None \n", | |
| "\n", | |
| " model_spawning_pk edge_type \\\n", | |
| "segmented_stream_id \n", | |
| "354095772.0 None 1000 \n", | |
| "354108776.0 None 1000 \n", | |
| "354108776.11000 None 1000 \n", | |
| "354109435.0 None 1000 \n", | |
| "354115253.0 None 1000 \n", | |
| "... ... ... \n", | |
| "360887426.20262512 None 1250 \n", | |
| "360887426.20294588 None 1250 \n", | |
| "360887426.20417273 None 1250 \n", | |
| "360887426.20672573 None 1250 \n", | |
| "360887428.721000 True 1250 \n", | |
| "\n", | |
| " geom \n", | |
| "segmented_stream_id \n", | |
| "354095772.0 LINESTRING Z (1043500.655 598416.875 1.000, 10... \n", | |
| "354108776.0 LINESTRING Z (1052882.822 569082.975 39.000, 1... \n", | |
| "354108776.11000 LINESTRING Z (1052878.634 569093.147 39.000, 1... \n", | |
| "354109435.0 LINESTRING Z (1010311.043 459221.994 1.000, 10... \n", | |
| "354115253.0 LINESTRING Z (877608.695 588037.902 1.000, 877... \n", | |
| "... ... \n", | |
| "360887426.20262512 LINESTRING Z (999330.487 801989.625 257.659, 9... \n", | |
| "360887426.20294588 LINESTRING Z (999353.841 801967.636 257.659, 9... \n", | |
| "360887426.20417273 LINESTRING Z (999384.919 801849.707 257.659, 9... \n", | |
| "360887426.20672573 LINESTRING Z (999417.026 801601.805 262.430, 9... \n", | |
| "360887428.721000 LINESTRING Z (1113978.540 610501.173 35.461, 1... \n", | |
| "\n", | |
| "[19856 rows x 10 columns]" | |
| ] | |
| }, | |
| "execution_count": 1, | |
| "metadata": {}, | |
| "output_type": "execute_result" | |
| } | |
| ], | |
| "source": [ | |
| "import os\n", | |
| "\n", | |
| "import pandas\n", | |
| "import geopandas\n", | |
| "from sqlalchemy import create_engine\n", | |
| "import seaborn as sns\n", | |
| "import matplotlib as mpl\n", | |
| "import matplotlib.pyplot as plt\n", | |
| "\n", | |
| "sns.set_theme(style=\"ticks\")\n", | |
| "conn = create_engine(os.environ[\"DATABASE_URL\"])\n", | |
| "\n", | |
| "# get all segments that have been manually identified as spawning/rearing AND\n", | |
| "# have either channel width or discharge data\n", | |
| "sql = \"\"\"select\n", | |
| " s.segmented_stream_id,\n", | |
| " s.gradient,\n", | |
| " s.mad_m3s,\n", | |
| " s.channel_width,\n", | |
| " s.stream_order,\n", | |
| " s.stream_order_parent,\n", | |
| " s.stream_order_max,\n", | |
| " u.model_spawning_cm_manual AS model_spawning_cm,\n", | |
| " u.model_spawning_pk_manual AS model_spawning_pk,\n", | |
| " s.edge_type,\n", | |
| " s.geom\n", | |
| "from bcfishpass.streams s\n", | |
| "inner join bcfishpass.user_habitat_classification_qa u\n", | |
| "on s.segmented_stream_id = u.segmented_stream_id\n", | |
| "where \n", | |
| " (u.model_spawning_cm_manual is not null\n", | |
| " or u.model_spawning_pk_manual is not null)\n", | |
| "and (s.channel_width is not null or s.mad_m3s is not null)\n", | |
| "and s.edge_type not in (1100, 1200, 1350, 1410, 1425, 1450)\"\"\"\n", | |
| "\n", | |
| "df = geopandas.read_postgis(sql, conn, index_col=\"segmented_stream_id\")\n", | |
| "# save as geojson\n", | |
| "df.to_file(\"spawning_cm_pk.geojson\", driver='GeoJSON')\n", | |
| "df" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": 2, | |
| "id": "694e71c6", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "data": { | |
| "text/html": [ | |
| "<div style=\"width:100%;\"><div style=\"position:relative;width:100%;height:0;padding-bottom:60%;\"><span style=\"color:#565656\">Make this Notebook Trusted to load map: File -> Trust Notebook</span><iframe srcdoc=\"<!DOCTYPE html>\n", | |
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| " <script>\n", | |
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| " <link rel="stylesheet" href="https://cdn.jsdelivr.net/gh/python-visualization/folium/folium/templates/leaflet.awesome.rotate.min.css"/>\n", | |
| " \n", | |
| " <meta name="viewport" content="width=device-width,\n", | |
| " initial-scale=1.0, maximum-scale=1.0, user-scalable=no" />\n", | |
| " <style>\n", | |
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| " .foliumpopup {\n", | |
| " margin: auto;\n", | |
| " }\n", | |
| " .foliumpopup table{\n", | |
| " margin: auto;\n", | |
| " }\n", | |
| " .foliumpopup tr{\n", | |
| " text-align: left;\n", | |
| " }\n", | |
| " .foliumpopup th{\n", | |
| " padding: 2px; padding-right: 8px;\n", | |
| " }\n", | |
| " </style>\n", | |
| " \n", | |
| "</head>\n", | |
| "<body> \n", | |
| " \n", | |
| " <div class="folium-map" id="map_78a5eb24f6de54629784b1271893ec52" ></div>\n", | |
| " \n", | |
| "</body>\n", | |
| "<script> \n", | |
| " \n", | |
| " var map_78a5eb24f6de54629784b1271893ec52 = L.map(\n", | |
| " "map_78a5eb24f6de54629784b1271893ec52",\n", | |
| " {\n", | |
| " center: [52.31554999898977, -125.04947095970888],\n", | |
| " crs: L.CRS.EPSG3857,\n", | |
| " zoom: 10,\n", | |
| " zoomControl: true,\n", | |
| " preferCanvas: false,\n", | |
| " }\n", | |
| " );\n", | |
| " L.control.scale().addTo(map_78a5eb24f6de54629784b1271893ec52);\n", | |
| "\n", | |
| " \n", | |
| "\n", | |
| " \n", | |
| " \n", | |
| " var tile_layer_cca8005ca899564ce454d5c148eaa632 = L.tileLayer(\n", | |
| " "https://a.basemaps.cartocdn.com/light_all/{z}/{x}/{y}{r}.png",\n", | |
| " {"attribution": "\\u0026copy; \\u003ca href=\\"https://www.openstreetmap.org/copyright\\"\\u003eOpenStreetMap\\u003c/a\\u003e contributors \\u0026copy; \\u003ca href=\\"https://carto.com/attributions\\"\\u003eCARTO\\u003c/a\\u003e", "detectRetina": false, "maxNativeZoom": 20, "maxZoom": 20, "minZoom": 0, "noWrap": false, "opacity": 1, "subdomains": "abc", "tms": false}\n", | |
| " ).addTo(map_78a5eb24f6de54629784b1271893ec52);\n", | |
| " \n", | |
| " \n", | |
| " map_78a5eb24f6de54629784b1271893ec52.fitBounds(\n", | |
| " [[48.35120484281356, -130.54514487948578], [56.27989515516599, -119.55379703993201]],\n", | |
| " {}\n", | |
| " );\n", | |
| " \n", | |
| " \n", | |
| " function geo_json_8d02309b087e1fca124fc71d6c8cbbdc_styler(feature) {\n", | |
| " switch(feature.id) {\n", | |
| " default:\n", | |
| " return {"color": "red", "fillColor": "red", "fillOpacity": 0.5, "weight": 2};\n", | |
| " }\n", | |
| " }\n", | |
| " function geo_json_8d02309b087e1fca124fc71d6c8cbbdc_highlighter(feature) {\n", | |
| " switch(feature.id) {\n", | |
| " default:\n", | |
| " return {"fillOpacity": 0.75};\n", | |
| " }\n", | |
| " }\n", | |
| " function geo_json_8d02309b087e1fca124fc71d6c8cbbdc_pointToLayer(feature, latlng) {\n", | |
| " var opts = {"bubblingMouseEvents": true, "color": "#3388ff", "dashArray": null, "dashOffset": null, "fill": true, "fillColor": "#3388ff", "fillOpacity": 0.2, "fillRule": "evenodd", "lineCap": "round", "lineJoin": "round", "opacity": 1.0, "radius": 2, "stroke": true, "weight": 3};\n", | |
| " \n", | |
| " let style = geo_json_8d02309b087e1fca124fc71d6c8cbbdc_styler(feature)\n", | |
| " Object.assign(opts, style)\n", | |
| " \n", | |
| " return new L.CircleMarker(latlng, opts)\n", | |
| " }\n", | |
| "\n", | |
| " function geo_json_8d02309b087e1fca124fc71d6c8cbbdc_onEachFeature(feature, layer) {\n", | |
| " layer.on({\n", | |
| " mouseout: function(e) {\n", | |
| " if(typeof e.target.setStyle === "function"){\n", | |
| " geo_json_8d02309b087e1fca124fc71d6c8cbbdc.resetStyle(e.target);\n", | |
| " }\n", | |
| " },\n", | |
| " mouseover: function(e) {\n", | |
| " if(typeof e.target.setStyle === "function"){\n", | |
| " const highlightStyle = geo_json_8d02309b087e1fca124fc71d6c8cbbdc_highlighter(e.target.feature)\n", | |
| " e.target.setStyle(highlightStyle);\n", | |
| " }\n", | |
| " },\n", | |
| " });\n", | |
| " };\n", | |
| " var geo_json_8d02309b087e1fca124fc71d6c8cbbdc = L.geoJson(null, {\n", | |
| " onEachFeature: geo_json_8d02309b087e1fca124fc71d6c8cbbdc_onEachFeature,\n", | |
| " \n", | |
| " style: geo_json_8d02309b087e1fca124fc71d6c8cbbdc_styler,\n", | |
| " pointToLayer: geo_json_8d02309b087e1fca124fc71d6c8cbbdc_pointToLayer\n", | |
| " });\n", | |
| "\n", | |
| " function geo_json_8d02309b087e1fca124fc71d6c8cbbdc_add (data) {\n", | |
| " geo_json_8d02309b087e1fca124fc71d6c8cbbdc\n", | |
| " .addData(data)\n", | |
| " .addTo(map_78a5eb24f6de54629784b1271893ec52);\n", | |
| " }\n", | |
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