petebankhead
/ QuPath-Exporting annotations as labelled images.groovy
Created
March 14, 2018 23:01
Script to export pixels & annotations for whole slide images, optionally with tiling.
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| /** | |
| * Script to export pixels & annotations for whole slide images. | |
| * | |
| * The image can optionally be tiled during export, so that even large images can be exported at high resolution. | |
| * (Note: In this case 'tiled' means as separate, non-overlapping images... not a single, tiled pyramidal image.) | |
| * | |
| * The downsample value and coordinates are encoded in each image file name. | |
| * | |
| * The annotations are exported as 8-bit labelled images. | |
| * These labels depend upon annotation classifications; a text file giving the key is written for reference. |