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@bonzanini
bonzanini / search_biopython.py
Last active June 16, 2025 13:33
Searching PubMed with Biopython
# This code uses Biopython to retrieve lists of articles from pubmed
# you need to install Biopython first.
# If you use Anaconda:
# conda install biopython
# If you use pip/venv:
# pip install biopython
# Full discussion:
@adamgibbons
adamgibbons / install-mongodb.md
Last active March 5, 2025 20:40
Install MongoDB on Mac OS X 10.9

Install MongoDB with Homebrew

brew install mongodb
mkdir -p /data/db

Set permissions for the data directory

Ensure that user account running mongod has correct permissions for the directory:




  


  




    


          
    

      

        
        

          

              @bsweger
          

          

            
                bsweger
                / useful_pandas_snippets.md
            
            

              Last active
              December 1, 2025 15:53
            

              
                Useful Pandas Snippets
              
          

        

      

        

  

      

    
Useful Pandas Snippets


A personal diary of DataFrame munging over the years.


Data Types and Conversion


Convert Series datatype to numeric (will error if column has non-numeric values)

(h/t @makmanalp)



  


  




    


          
    

      

        
        

          

              @evernotegists
          

          

            
                evernotegists
                / sample-enex.xml
            
            

              Last active
              March 3, 2024 17:49
            

          

        

      

        

  

    
    


        



  


  

        

          
          <?xml version="1.0" encoding="UTF-8"?>
        

        

          
          <!DOCTYPE en-export SYSTEM "http://xml.evernote.com/pub/evernote-export3.dtd">
        

        

          
          <en-export export-date="20130730T205637Z" application="Evernote" version="Evernote Mac">
        

        

          
              <note>
        

        

          
                  <title>Test Note for Export</title>
        

        

          
                  <content>
        

        

          
                      <![CDATA[<?xml version="1.0" encoding="UTF-8" standalone="no"?>
        

        

          
                      <!DOCTYPE en-note SYSTEM "http://xml.evernote.com/pub/enml2.dtd">
        

        

          
                      <en-note style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">
        

        

          
                          Hello, World.