Jaehoon Baek Stfort52

Lisipy

This is a port of the LISI algorithm from harmony in python, directly from Rcpp.

It should yield identical results as the python version while showing similar performance as the Rcpp version, thanks to the power of numba JIT.

Plot pytorch module parameters

A simple implementation.

CODEGATE 2022 Finals VM

Analysis

We are given a virtual machine binary called run, and a custom binary for it called VM. It has 16 registers and a flat memory. Below is the opcodes of this VM.

Then, we should disassemble the given program to see what's going on. disasm.py disassembles the custom binary VM into disassembly.S. Take a look at it.

CODEGATE 2022 Finals verylog

TL;DR

Analysis

These modules,

generate six permutation states from fixed seed (T_0)
opens key.txt(T_2)
reads each numbers from key.txt(T_3)
generates answer by permutation (T_1)
compares answer with input (T_3)

	function init_conda_envs() {
	local env_dir="$HOME/path/to/your/conda/dir/envs"
	if [[ -d "$env_dir" ]]; then
	export CONDA_ENVS=$(ls -1 "$env_dir" \| xargs)
	else
	export CONDA_ENVS=""
	fi
	}

	function here() {

	# From the paper "Multi-Label Supervised Contrastive Learning"
	# https://doi.org/10.1609/aaai.v38i15.29619
	# https://github.com/williamzhangsjtu/MulSupCon
	from typing import Callable, Literal, overload

	import torch
	import torch.nn.functional as F
	from torch import Tensor, nn

	OUTPUT_FUNC_T = Callable[[Tensor, Tensor, Tensor], tuple[Tensor, ...]]

	import pandas as pd
	import matplotlib.pyplot as plt

	def draw_candlestick(data, time_axis, window_size, **kwargs) -> plt.Figure:
	"""
	Draws a candlestick chart.

	Parameters:
	data (list or np.ndarray): Continuous data points.
	time_axis (list or np.ndarray): Corresponding time points (timestamps or discrete steps).

	from typing import Literal

	import pandas as pd


	def get_ensembl_mappings(
	genes: list[str],
	organism: str = "hsa",
	server: Literal["www", "eu", "uswest", "asia", "gprofiler"] = "asia",
	) -> pd.DataFrame:

	def ens2seq(ensembl_id: str) -> str:
	"""Converts ensembl gene id to protein sequence
	@ensembl_id: str, ensembl gene id
	"""
	uri = f"https://rest.uniprot.org/uniprotkb/stream?"

	query = f"({ensembl_id}) AND (reviewed:true)"

	params = {
	"compressed": "false",