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(partial) EasyBuild log for failed build of /tmp/eb-3mffowwi/files_pr24660/g/GROMACS/GROMACS-2025.2-lmpflf-2025b.eb (PR(s) #24660)
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| [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/tests/simd4_floatingpoint.cpp | |
| [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o -MF CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/tests/simd4_math.cpp | |
| [ 82%] Linking CXX executable ../../../../bin/energyanalysis-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/energyanalysis/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 | |
| [ 82%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -MF CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/helpwriting.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -MF CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/outputfiles.cpp | |
| [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o -MF CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/filemd5.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/trajectory_writing.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/interactiveMD.cpp | |
| [ 82%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/tools/tests/trjconv.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/energyanalysis-test.dir/link.d "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 82%] Built target energyanalysis-test | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/mimic.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake "--color=" | |
| [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o -MF CMakeFiles/selection-test.dir/selectionoption.cpp.o.d -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/selection/tests/selectionoption.cpp | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/checkpoint.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -MF CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/exactcontinuation.cpp | |
| [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/coordinateio/tests/setstarttime.cpp | |
| [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/tests/simd4_vector_operations.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -MF CMakeFiles/mdrun-io-test.dir/grompp.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/grompp.cpp | |
| [ 82%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -MF CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/initialconstraints.cpp | |
| [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o -MF CMakeFiles/fileio-test.dir/filetypes.cpp.o.d -o CMakeFiles/fileio-test.dir/filetypes.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/filetypes.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o -MF CMakeFiles/mdrun-io-test.dir/termination.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/termination.cpp | |
| [ 82%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/tools/tests/convert-tpr.cpp | |
| [ 82%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 82%] Linking CXX executable ../../../../bin/mdrun-modules-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 | |
| [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/matio.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/matio.cpp.o -MF CMakeFiles/fileio-test.dir/matio.cpp.o.d -o CMakeFiles/fileio-test.dir/matio.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/matio.cpp | |
| [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -MF CMakeFiles/coordinateio-test.dir/settimestep.cpp.o.d -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/coordinateio/tests/settimestep.cpp | |
| [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o -MF CMakeFiles/selection-test.dir/toputils.cpp.o.d -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/selection/tests/toputils.cpp | |
| [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/simd/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 82%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp | |
| [ 83%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/coordinateio/tests/testmodule.cpp | |
| [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-modules-test.dir/link.d "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Built target mdrun-modules-test | |
| [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/mdrun-output-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 | |
| [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/readir.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| PASSED [ 75%] | |
| ../../../../gromacs-2025.2/python_packaging/sample_restraint/tests/test_plugin.py::test_ensemble_potential_withmpi SKIPPED [100%] | |
| =================== 3 passed, 1 skipped in 269.28s (0:04:29) =================== | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake "--color=" | |
| [ 83%] Built target gmxapi_extension_pytest | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-output-test.dir/link.d "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/DependInfo.cmake "--color=" | |
| [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/solvate.cpp | |
| [ 83%] Built target mdrun-output-test | |
| make -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/depend | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -MF CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o.d -o CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/multiple_time_stepping.cpp | |
| [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/gmxpreprocess/tests/topdirs.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/tool-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/tools/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 | |
| PASSED [ 73%] | |
| ../../../../gromacs-2025.2/python_packaging/gmxapi/test/test_operation.py::test_comparison PASSED [ 75%] | |
| ../../../../gromacs-2025.2/python_packaging/gmxapi/test/test_operation.py::test_scalar PASSED [ 78%] | |
| ../../../../gromacs-2025.2/python_packaging/gmxapi/test/test_operation.py::test_list PASSED [ 80%] | |
| ../../../../gromacs-2025.2/python_packaging/gmxapi/test/test_operation.py::test_data_dependence make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/dispersion_correction.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/minimize.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/minimize.cpp.o -MF CMakeFiles/minimize-test.dir/minimize.cpp.o.d -o CMakeFiles/minimize-test.dir/minimize.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/minimize.cpp | |
| [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -MF CMakeFiles/fileio-test.dir/mrcserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/mrcserializer.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/simd-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/simd/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 | |
| PASSED [ 82%] | |
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| ../../../../gromacs-2025.2/python_packaging/gmxapi/test/test_subgraph.py::test_subgraph_function PASSED [ 95%] | |
| ../../../../gromacs-2025.2/python_packaging/gmxapi/test/test_subgraph.py::test_subgraph_simulation_extension [ 83%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/selection-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/selection/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -MF CMakeFiles/mdrun-test.dir/swapcoords.cpp.o.d -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/swapcoords.cpp | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/nonbonded_bench.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/normalmodes.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/mdrun-io-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/tool-test.dir/link.d "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Built target tool-test | |
| [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/topology/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/selection-test.dir/link.d "CMakeFiles/selection-test.dir/indexutil.cpp.o" "CMakeFiles/selection-test.dir/nbsearch.cpp.o" "CMakeFiles/selection-test.dir/poscalc.cpp.o" "CMakeFiles/selection-test.dir/selectioncollection.cpp.o" "CMakeFiles/selection-test.dir/selectionoption.cpp.o" "CMakeFiles/selection-test.dir/toputils.cpp.o" "CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/selection-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Built target selection-test | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/simd-test.dir/link.d "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" "CMakeFiles/simd-test.dir/simd.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o" "CMakeFiles/simd-test.dir/simd_integer.cpp.o" "CMakeFiles/simd-test.dir/simd_math.cpp.o" "CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -MF CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/mrcdensitymap.cpp | |
| [ 83%] Built target simd-test | |
| [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -MF CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/mrcdensitymapheader.cpp | |
| [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o -MF CMakeFiles/fileio-test.dir/readinp.cpp.o.d -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/readinp.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/ewaldsurfaceterm.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/orires.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-io-test.dir/link.d "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Built target mdrun-io-test | |
| [ 83%] Linking CXX executable ../../../../bin/coordinateio-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/coordinateio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/rerun.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/simple_mdrun.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/minimize-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/minimize-test.dir/link.txt --verbose=1 | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -MF CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o.d -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -MF CMakeFiles/mdrun-test.dir/freezegroups.cpp.o.d -o CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/freezegroups.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -MF CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o.d -o CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/constantacceleration.cpp | |
| [ 83%] Linking CXX executable ../../../../bin/gmxpreprocess-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/gmxpreprocess/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/coordinateio-test.dir/link.d "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Built target coordinateio-test | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o -MF CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o.d -o CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/boxdeformation.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/minimize-test.dir/link.d "CMakeFiles/minimize-test.dir/minimize.cpp.o" "CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/minimize-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake "--color=" | |
| [ 83%] Built target minimize-test | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake "--color=" | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/tpitest.cpp | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/domain_decomposition.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/multisim.cpp | |
| [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o -MF CMakeFiles/fileio-test.dir/timecontrol.cpp.o.d -o CMakeFiles/fileio-test.dir/timecontrol.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/timecontrol.cpp | |
| [ 84%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -MF CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/fileioxdrserializer.cpp | |
| [ 85%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 | |
| [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/multisimtest.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/multisimtest.cpp | |
| [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/replicaexchange.cpp | |
| [ 86%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/gmxpreprocess-test.dir/link.d "CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 86%] Built target gmxpreprocess-test | |
| [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -MF CMakeFiles/fileio-test.dir/tngio.cpp.o.d -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/tngio.cpp | |
| [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/fileio/tests/xvgio.cpp | |
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| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 86%] Built target mdrun-single-rank-algorithms-test | |
| [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 86%] Linking CXX executable ../../../../bin/mdrun-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 | |
| [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
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| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 86%] Built target mdrun-non-integrator-test | |
| [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/mimic.cpp | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/DependInfo.cmake "--color=" | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/multisimtest.cpp | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/replicaexchange_equivalence.cpp | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/pmetest.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/periodicactions.cpp | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/periodicactions.cpp | |
| [ 88%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/periodicactions.cpp | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/periodicactions_constraints.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-test.dir/link.d "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 88%] Built target mdrun-test | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 88%] Linking CXX executable ../../../../bin/mdrun-multisim-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 | |
| [ 88%] Linking CXX executable ../../../../bin/fileio-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/gromacs/fileio/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 | |
| [ 88%] Linking CXX executable ../../../../bin/mdrun-tpi-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2 /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build | |
| make[3]: Entering directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-multisim-replex-test.dir/link.d "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 88%] Built target mdrun-multisim-replex-test | |
| [ 88%] Linking CXX executable ../../../../bin/mdrun-mpi-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/expandedensemble.cpp | |
| [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/freeenergy.cpp | |
| Fatal Python error: Aborted | |
| Current thread 0x00004000002b8200 (most recent call first): | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/simulation/context.py", line 313 in runner | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/simulation/context.py", line 1090 in run | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/simulation/mdrun.py", line 509 in __init__ | |
| File "__init__", line ??? in __init__ | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/simulation/mdrun.py", line 743 in update_output | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 1785 in result | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 2427 in <lambda> | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 2449 in resolve | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 2465 in sink | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 3107 in local_input | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib/python3.13/contextlib.py", line 141 in __enter__ | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 2977 in update_output | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 1785 in result | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 5061 in run | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 5306 in run_loop | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 3340 in __call__ | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 4204 in __call__ | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 3024 in update_output | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging/gmxapi/operation.py", line 3545 in run | |
| File "/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/python_packaging/gmxapi/test/test_subgraph.py", line 139 in test_subgraph_simulation_extension | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/python.py", line 157 in pytest_pyfunc_call | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_callers.py", line 121 in _multicall | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_hooks.py", line 512 in __call__ | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/python.py", line 1671 in runtest | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/runner.py", line 178 in pytest_runtest_call | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_callers.py", line 121 in _multicall | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_hooks.py", line 512 in __call__ | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/runner.py", line 246 in <lambda> | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/runner.py", line 344 in from_call | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/runner.py", line 245 in call_and_report | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/runner.py", line 136 in runtestprotocol | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/runner.py", line 117 in pytest_runtest_protocol | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_callers.py", line 121 in _multicall | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_hooks.py", line 512 in __call__ | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/main.py", line 367 in pytest_runtestloop | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_callers.py", line 121 in _multicall | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_hooks.py", line 512 in __call__ | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/main.py", line 343 in _main | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/main.py", line 289 in wrap_session | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/main.py", line 336 in pytest_cmdline_main | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_callers.py", line 121 in _multicall | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pluggy/_hooks.py", line 512 in __call__ | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175 in main | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201 in console_main | |
| File "/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python-bundle-PyPI/2025.07-GCCcore-14.3.0/lib/python3.13/site-packages/pytest/__main__.py", line 9 in <module> | |
| File "<frozen runpy>", line 88 in _run_code | |
| File "<frozen runpy>", line 198 in _run_module_as_main | |
| Extension modules: mpi4py.MPI, numpy._core._multiarray_umath, numpy.linalg._umath_linalg (total: 3) | |
| Subprocess aborted | |
| make[3]: *** [python_packaging/gmxapi/test/CMakeFiles/gmxapi_pytest.dir/build.make:73: python_packaging/gmxapi/test/CMakeFiles/gmxapi_pytest] Error 1 | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make[2]: *** [CMakeFiles/Makefile2:9325: python_packaging/gmxapi/test/CMakeFiles/gmxapi_pytest.dir/all] Error 2 | |
| make[2]: *** Waiting for unfinished jobs.... | |
| [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/periodicactions_coupling.cpp | |
| [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 89%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 | |
| [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/programs/mdrun/tests/periodicactions_basic.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-multisim-test.dir/link.d "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-multisim-test | |
| [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/fileio-test.dir/link.d "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/matio.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 /usr/lib64/libm.so ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/utility/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/api/legacy/include -I/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/gromacs/math/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/thread_mpi/include -isystem /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/muparser -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googlemock -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest/include -isystem /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/external/googletest/googletest -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -std=c++17 -msve-vector-bits=128 -Wno-reserved-identifier -Wno-missing-field-initializers -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-switch-default -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-zero-as-null-pointer-constant -Wno-gnu-zero-variadic-macro-arguments -Wno-unused-member-function -fopenmp=libomp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/gromacs-2025.2/src/testutils/unittest_main.cpp | |
| [ 89%] Built target fileio-test | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-tpi-test.dir/link.d "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-tpi-test | |
| [ 89%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-mpi-test.dir/link.d "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-mpi-test | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-mpi-pme-test.dir/link.d "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-mpi-pme-test | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-coordination-constraints-test.dir/link.d "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-constraints-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-coordination-constraints-test | |
| [ 89%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 | |
| [ 89%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.d "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 | |
| [ 89%] Built target mdrun-multisim-replex-equivalence-test | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-coordination-coupling-test.dir/link.d "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-coupling-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-coordination-coupling-test | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-coordination-basic-test.dir/link.d "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-coordination-basic-test | |
| [ 89%] Linking CXX executable ../../../../bin/mdrun-fep-test | |
| cd /dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/src/programs/mdrun/tests && /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/CMake/4.0.3-GCCcore-14.3.0/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 | |
| /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/bin/mpicxx -O2 -march=native -fopenmp -Wno-unused-command-line-argument -Wno-error=int-conversion -O3 -DNDEBUG -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/ScaLAPACK/2.2.2-lmpich-2025b-fb/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW.MPI/3.3.10-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FFTW/3.3.10-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/FlexiBLAS/3.4.5-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/MPICH/4.3.2-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/LLVM/20.1.8-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/mpi4py/4.1.0-lmpich-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/networkx/3.5-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/SciPy-bundle/2025.07-lfbf-2025b/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/Python/3.13.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/pybind11/3.0.0-llvm-compilers-20.1.8/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib64 -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/scikit-build-core/0.11.5-GCCcore-14.3.0/lib -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/XZ/5.8.1-GCCcore-14.3.0/lib -llzma -L/p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/zlib/1.3.1-GCCcore-14.3.0/lib -lz -Xlinker --dependency-file=CMakeFiles/mdrun-fep-test.dir/link.d "CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o" "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,"\$ORIGIN/../lib" ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.10.0.0 /usr/lib64/libm.so ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 -Wl,-rpath-link,/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj/lib | |
| make[3]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| [ 89%] Built target mdrun-fep-test | |
| make[2]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make[1]: *** [CMakeFiles/Makefile2:4526: CMakeFiles/check.dir/rule] Error 2 | |
| make[1]: Leaving directory '/dev/shm/reuter1/easybuild/build/GROMACS/2025.2/lmpflf-2025b/easybuild_obj' | |
| make: *** [Makefile:632: check] Error 2 | |
| == 2025-12-09 22:22:24,305 build_log.py:233 ERROR EasyBuild encountered an error: shell command 'make ...' failed in test step for GROMACS-2025.2-lmpflf-2025b.eb (at easybuild/framework/easyblock.py:2570 in report_test_failure) | |
| Callstack: | |
| easybuild/framework/easyblock.py:2570 in report_test_failure | |
| easybuild/framework/easyblock.py:3062 in _test_step | |
| easybuild/framework/easyblock.py:4750 in run_step | |
| easybuild/framework/easyblock.py:4909 in run_all_steps | |
| easybuild/easyblocks/g/gromacs.py:810 in run_all_steps | |
| easybuild/framework/easyblock.py:5096 in build_and_install_one | |
| easybuild/main.py:178 in build_and_install_software | |
| easybuild/main.py:611 in process_eb_args | |
| easybuild/main.py:793 in main | |
| easybuild/main.py:841 in main_with_hooks | |
| easybuild/main.py:855 in <module> | |
| == 2025-12-09 22:22:24,306 build_log.py:329 INFO ... (took 5 mins 22 secs) | |
| == 2025-12-09 22:22:24,306 filetools.py:2152 INFO Removing lock /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/.locks/_p_project1_cswmanage_reuter1_EasyBuild_jedi_apps_software_GROMACS_2025.2-lmpflf-2025b.lock... | |
| == 2025-12-09 22:22:24,306 filetools.py:423 INFO Path /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/.locks/_p_project1_cswmanage_reuter1_EasyBuild_jedi_apps_software_GROMACS_2025.2-lmpflf-2025b.lock successfully removed. | |
| == 2025-12-09 22:22:24,306 filetools.py:2156 INFO Lock removed: /p/project1/cswmanage/reuter1/EasyBuild/jedi/apps/software/.locks/_p_project1_cswmanage_reuter1_EasyBuild_jedi_apps_software_GROMACS_2025.2-lmpflf-2025b.lock | |
| == 2025-12-09 22:22:24,306 easyblock.py:389 INFO Closing log for application name GROMACS version 2025.2 |
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