Created
January 16, 2026 20:26
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limix-legacy pytest log
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| ============================= test session starts ============================== | |
| platform darwin -- Python 3.11.11, pytest-9.0.2, pluggy-1.6.0 | |
| rootdir: /Users/pattinson/myrepos/mapdeduce | |
| configfile: pyproject.toml | |
| collected 81 items / 2 errors | |
| ==================================== ERRORS ==================================== | |
| ______________________ ERROR collecting test/test_blup.py ______________________ | |
| ImportError while importing test module '/Users/pattinson/myrepos/mapdeduce/test/test_blup.py'. | |
| Hint: make sure your test modules/packages have valid Python names. | |
| Traceback: | |
| /opt/homebrew/Cellar/python@3.11/3.11.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/importlib/__init__.py:126: in import_module | |
| return _bootstrap._gcd_import(name[level:], package, level) | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| test/test_blup.py:10: in <module> | |
| from mapdeduce.blup import LmmBlup, FluLmmBlup | |
| mapdeduce/blup.py:8: in <module> | |
| from limix_legacy.modules.varianceDecomposition import VarianceDecomposition | |
| E ModuleNotFoundError: No module named 'limix_legacy.modules' | |
| ______________________ ERROR collecting test/test_hwas.py ______________________ | |
| ImportError while importing test module '/Users/pattinson/myrepos/mapdeduce/test/test_hwas.py'. | |
| Hint: make sure your test modules/packages have valid Python names. | |
| Traceback: | |
| /opt/homebrew/Cellar/python@3.11/3.11.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/importlib/__init__.py:126: in import_module | |
| return _bootstrap._gcd_import(name[level:], package, level) | |
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
| test/test_hwas.py:13: in <module> | |
| from mapdeduce.hwas import ( | |
| mapdeduce/hwas.py:9: in <module> | |
| from limix_legacy.modules.qtl import qtl_test_lmm, qtl_test_lmm_kronecker | |
| E ModuleNotFoundError: No module named 'limix_legacy.modules' | |
| =========================== short test summary info ============================ | |
| ERROR test/test_blup.py | |
| ERROR test/test_hwas.py | |
| !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! | |
| ============================== 2 errors in 1.42s =============================== |
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