Created
March 16, 2011 11:54
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| track = myGlyph.AnnotationLine(glyph='xyplot', subtype='density', height=60, min_score=0, shadow=True, foreground='crimson', label='PET coverage') | |
| items = [(p['head']['fref'], p['head']['fstart'], p['tail']['fend'], p['tail']['fend'] - p['head']['fstart'], 'PET') for p in pets.pets] | |
| for i in items: | |
| track.add(i) | |
| svg = myGlyph.mySVGRenderer(annotation_lines=[track], | |
| documentWidth=800, | |
| documentHeight=300, | |
| genomic_span=30000, | |
| fref='scaffold_1', | |
| genome_offset=pets.pets[0]['head']['fstart']-2000, | |
| legend=True) | |
| svg.render() | |
| with open(name+'.svg', 'w') as off: | |
| print >>off, svg |
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