jeremiaheb · January 29, 2016 19:39
diff --git a/README.md b/README.md
diff --git a/chart.js b/chart.js
 Words
diff --git a/index.html b/index.html

 <!DOCTYPE html>
 <html class="ocks-org do-not-copy">
 <meta charset="utf-8">
 <title>RVC Top 75 Species </title>
 <style>

 @import url(../style.css?aea6f0a);

 body {
  background-color: white;
 }

 #chart {
  margin-left: -40px;
  height: 506px;
 }


 text {
  font: 10px sans-serif;
 }

 .dot {
  stroke: #000;
 }

 .axis path, .axis line {
  fill: none;
  stroke: #000;
  shape-rendering: crispEdges;
 }

 .label {
  fill: #777;
 }

 .year.label {
  font: 500 196px "Helvetica Neue";
  fill: #ddd;
 }

 .year.label.active {
  fill: #aaa;
 }

 .overlay {
  fill: none;
  pointer-events: all;
  cursor: ew-resize;
 }

 </style>

 <header>
 </header>

 <h1>RVC Top 75 Species</h1>

 <p id="chart"></p>

 <aside>Mouseover the year to move forward and backwards through time.</aside>


 <script src="//d3js.org/d3.v3.min.js" charset="utf-8"></script></script>
 <script>

 // Various accessors that specify the four dimensions of data to visualize.
 function x(d) { return d.occurrence; }
 function y(d) { return d.lbar; }
 function radius(d) { return d.biomass; }
 function color(d) { return d.family; }
 function key(d) { return d.species; }

 // Chart dimensions.
 var margin = {top: 19.5, right: 19.5, bottom: 19.5, left: 39.5},
    width = 960 - margin.right,
    height = 500 - margin.top - margin.bottom;

 // Various scales. These domains make assumptions of data, naturally.
 var xScale = d3.scale.linear().domain([0, 1]).range([0, width]),
    yScale = d3.scale.linear().domain([1, 50]).range([height, 0]),
    radiusScale = d3.scale.linear().domain([300000, 2500000]).range([5, 40]),
    colorScale = d3.scale.category20();

 // The x & y axes.
 var xAxis = d3.svg.axis().orient("bottom").scale(xScale).ticks(12, d3.format(",d")),
    yAxis = d3.svg.axis().scale(yScale).orient("right");

 // Create the SVG container and set the origin.
 var svg = d3.select("#chart").append("svg")
    .attr("width", width + margin.left + margin.right)
    .attr("height", height + margin.top + margin.bottom)
  .append("g")
    .attr("transform", "translate(" + margin.left + "," + margin.top + ")");

 // Add the x-axis.
 svg.append("g")
    .attr("class", "x axis")
    .attr("transform", "translate(0," + height + ")")
    .call(xAxis);

 // Add the y-axis.
 svg.append("g")
    .attr("class", "y axis")
    .call(yAxis);

 // Add an x-axis label.
 svg.append("text")
    .attr("class", "x label")
    .attr("text-anchor", "end")
    .attr("x", width)
    .attr("y", height - 6)
    .text("Occurrence");

 // Add a y-axis label.
 svg.append("text")
    .attr("class", "y label")
    .attr("text-anchor", "end")
    .attr("y", 6)
    .attr("dy", ".75em")
    .attr("transform", "rotate(-90)")
    .text("lbar");

 // Add the year label; the value is set on transition.
 var label = svg.append("text")
    .attr("class", "year label")
    .attr("text-anchor", "end")
    .attr("y", height - (.65*height))
    .attr("x", width)
    .text(2000);

 // Load the data.
 d3.json("RVCData.json", function(nations) {

  // A bisector since many nation's data is sparsely-defined.
  var bisect = d3.bisector(function(d) { return d[0]; });

  // Add a dot per nation. Initialize the data at 1800, and set the colors.
  var dot = svg.append("g")
      .attr("class", "dots")
    .selectAll(".dot")
      .data(interpolateData(2000))
    .enter().append("circle")
    .attr("class", function(d) { return "dot" + " " + d.family })
      .style("fill", function(d) { return colorScale(color(d)); })
      .call(position)
      .sort(order)
      .on("click", function(d) {
          var fam = d.family;
          d3.selectAll(".dot").style("opacity", 1);
          d3.selectAll(".dot").filter("*:not(." + fam + ")").style("opacity", .05); 
      });

  // Add a title.
  dot.append("title")
      .text(function(d) { return d.species; });

  // Add an overlay for the year label.
  var box = label.node().getBBox();

  var overlay = svg.append("rect")
        .attr("class", "overlay")
        .attr("x", box.x)
        .attr("y", box.y)
        .attr("width", box.width)
        .attr("height", box.height)
        .on("mouseover", enableInteraction);

  // Start a transition that interpolates the data based on year.
  svg.transition()
      .duration(30000)
      .ease("linear")
      .tween("year", tweenYear)
      .each("end", enableInteraction);

  // Positions the dots based on data.
  function position(dot) {
    dot .attr("cx", function(d) { return xScale(x(d)); })
        .attr("cy", function(d) { return yScale(y(d)); })
        .attr("r", function(d) { return radiusScale(radius(d)); });
  }

  // Defines a sort order so that the smallest dots are drawn on top.
  function order(a, b) {
    return radius(b) - radius(a);
  }

  // After the transition finishes, you can mouseover to change the year.
  function enableInteraction() {
    var yearScale = d3.scale.linear()
        .domain([2000, 2014])
        .range([box.x + 10, box.x + box.width - 10])
        .clamp(true);

    // Cancel the current transition, if any.
    svg.transition().duration(0);

    overlay
        .on("mouseover", mouseover)
        .on("mouseout", mouseout)
        .on("mousemove", mousemove)
        .on("touchmove", mousemove);

    function mouseover() {
      label.classed("active", true);
    }

    function mouseout() {
      label.classed("active", false);
    }

    function mousemove() {
      displayYear(yearScale.invert(d3.mouse(this)[0]));
    }
  }

  // Tweens the entire chart by first tweening the year, and then the data.
  // For the interpolated data, the dots and label are redrawn.
  function tweenYear() {
    var year = d3.interpolateNumber(2000, 2014);
    return function(t) { displayYear(year(t)); };
  }

  // Updates the display to show the specified year.
  function displayYear(year) {
    dot.data(interpolateData(year), key).call(position).sort(order);
    label.text(Math.round(year));
  }

  // Interpolates the dataset for the given (fractional) year.
  function interpolateData(year) {
    return nations.map(function(d) {
      return {
        species: d.species,
        family: d.family,
        lbar: interpolateValues(d.lbar, year),
        biomass: interpolateValues(d.biomass, year),
        occurrence: interpolateValues(d.occurrence, year)
      };
    });
  }

  // Finds (and possibly interpolates) the value for the specified year.
  function interpolateValues(values, year) {
    var i = bisect.left(values, year, 0, values.length - 1),
        a = values[i];
    if (i > 0) {
      var b = values[i - 1],
          t = (year - a[0]) / (b[0] - a[0]);
      return a[1] * (1 - t) + b[1] * t;
    }
    return a[1];
  }
 });

 </script>
 <script>

 GoogleAnalyticsObject = "ga", ga = function() { ga.q.push(arguments); }, ga.q = [], ga.l = +new Date;
 ga("create", "UA-48272912-3", "ocks.org");
 ga("send", "pageview");

 </script>
 <script async src="//www.google-analytics.com/analytics.js"></script>
diff --git a/RVCData.json b/RVCData.json
 [
 {
 "family": "Acanthuridae",
 "species": "Acanthurus bahianus",
 "occurrence": [
 [
 2000,
 0.75717 
 ],
 [
 2001,
 0.75153 
 ],
 [
 2002,
 0.80021 
 ],
 [
 2003,
 0.86798 
 ],
 [
 2004,
 0.8247 
 ],
 [
 2005,
 0.78359 
 ],
 [
 2006,
 0.75979 
 ],
 [
 2007,
 0.82749 
 ],
 [
 2008,
 0.81852 
 ],
 [
 2009,
 0.83874 
 ],
 [
 2010,
 0.76686 
 ],
 [
 2011,
 0.81459 
 ],
 [
 2012,
 0.81068 
 ],
 [
 2014,
 0.82815 
 ] 
 ],
 "density": [
 [
 2000,
 3.1516 
 ],
 [
 2001,
 3.3155 
 ],
 [
 2002,
 3.6712 
 ],
 [
 2003,
 3.3316 
 ],
 [
 2004,
 4.6335 
 ],
 [
 2005,
 3.6634 
 ],
 [
 2006,
 2.9459 
 ],
 [
 2007,
 3.0737 
 ],
 [
 2008,
 3.8709 
 ],
 [
 2009,
 4.2253 
 ],
 [
 2010,
 2.8153 
 ],
 [
 2011,
 2.8535 
 ],
 [
 2012,
 3.449 
 ],
 [
 2014,
 3.8515 
 ] 
 ],
 "abundance": [
 [
 2000,
 1.2051e+07 
 ],
 [
 2001,
 1.2678e+07 
 ],
 [
 2002,
 1.4038e+07 
 ],
 [
 2003,
 1.2739e+07 
 ],
 [
 2004,
 1.759e+07 
 ],
 [
 2005,
 1.4008e+07 
 ],
 [
 2006,
 1.1265e+07 
 ],
 [
 2007,
 1.1753e+07 
 ],
 [
 2008,
 1.4802e+07 
 ],
 [
 2009,
 1.6157e+07 
 ],
 [
 2010,
 1.0765e+07 
 ],
 [
 2011,
 1.0911e+07 
 ],
 [
 2012,
 1.3188e+07 
 ],
 [
 2014,
 1.4725e+07 
 ] 
 ],
 "biomass": [
 [
 2000,
 7.0025e+05 
 ],
 [
 2001,
 7.5362e+05 
 ],
 [
 2002,
 7.837e+05 
 ],
 [
 2003,
 7.4544e+05 
 ],
 [
 2004,
 2.1324e+06 
 ],
 [
 2005,
 1.1423e+06 
 ],
 [
 2006,
 6.8239e+05 
 ],
 [
 2007,
 7.405e+05 
 ],
 [
 2008,
 1.1327e+06 
 ],
 [
 2009,
 1.3236e+06 
 ],
 [
 2010,
 7.6087e+05 
 ],
 [
 2011,
 8.5751e+05 
 ],
 [
 2012,
 9.5988e+05 
 ],
 [
 2014,
 1.1202e+06 
 ] 
 ],
 "lbar": [
 [
 2000,
 12.138 
 ],
 [
 2001,
 12.359 
 ],
 [
 2002,
 11.801 
 ],
 [
 2003,
 12.465 
 ],
 [
 2004,
 14.382 
 ],
 [
 2005,
 12.412 
 ],
 [
 2006,
 12.333 
 ],
 [
 2007,
 12.44 
 ],
 [
 2008,
 13.714 
 ],
 [
 2009,
 13.922 
 ],
 [
 2010,
 13.017 
 ],
 [
 2011,
 13.977 
 ],
 [
 2012,
 13.48 
 ],
 [
 2014,
 13.704 
 ] 
 ] 
 },
 {
 "family": "Acanthuridae",
 "species": "Acanthurus chirurgus",
 "occurrence": [
 [
 2000,
 0.62387 
 ],
 [
 2001,
 0.60885 
 ],
 [
 2002,
 0.54479 
 ],
 [
 2003,
 0.59639 
 ],
 [
 2004,
 0.58483 
 ],
 [
 2005,
 0.41337 
 ],
 [
 2006,
 0.50331 
 ],
 [
 2007,
 0.59426 
 ],
 [
 2008,
 0.57743 
 ],
 [
 2009,
 0.52043 
 ],
 [
 2010,
 0.50682 
 ],
 [
 2011,
 0.56824 
 ],
 [
 2012,
 0.49007 
 ],
 [
 2014,
 0.50017 
 ] 
 ],
 "density": [
 [
 2000,
 2.3142 
 ],
 [
 2001,
 2.5646 
 ],
 [
 2002,
 2.1514 
 ],
 [
 2003,
 1.9264 
 ],
 [
 2004,
 3.0077 
 ],
 [
 2005,
 1.807 
 ],
 [
 2006,
 1.9226 
 ],
 [
 2007,
 2.393 
 ],
 [
 2008,
 2.2977 
 ],
 [
 2009,
 2.1128 
 ],
 [
 2010,
 1.7177 
 ],
 [
 2011,
 1.8241 
 ],
 [
 2012,
 1.8763 
 ],
 [
 2014,
 1.7954 
 ] 
 ],
 "abundance": [
 [
 2000,
 8.8492e+06 
 ],
 [
 2001,
 9.8063e+06 
 ],
 [
 2002,
 8.2266e+06 
 ],
 [
 2003,
 7.3661e+06 
 ],
 [
 2004,
 1.1418e+07 
 ],
 [
 2005,
 6.9097e+06 
 ],
 [
 2006,
 7.3515e+06 
 ],
 [
 2007,
 9.1503e+06 
 ],
 [
 2008,
 8.7858e+06 
 ],
 [
 2009,
 8.0789e+06 
 ],
 [
 2010,
 6.5683e+06 
 ],
 [
 2011,
 6.9749e+06 
 ],
 [
 2012,
 7.1744e+06 
 ],
 [
 2014,
 6.8641e+06 
 ] 
 ],
 "biomass": [
 [
 2000,
 1.3657e+06 
 ],
 [
 2001,
 3.5054e+06 
 ],
 [
 2002,
 1.8416e+06 
 ],
 [
 2003,
 1.7808e+06 
 ],
 [
 2004,
 6.8986e+06 
 ],
 [
 2005,
 1.6161e+06 
 ],
 [
 2006,
 1.563e+06 
 ],
 [
 2007,
 2.6723e+06 
 ],
 [
 2008,
 1.6165e+06 
 ],
 [
 2009,
 1.5736e+06 
 ],
 [
 2010,
 9.2832e+05 
 ],
 [
 2011,
 1.0015e+06 
 ],
 [
 2012,
 1.1025e+06 
 ],
 [
 2014,
 1.1368e+06 
 ] 
 ],
 "lbar": [
 [
 2000,
 16.435 
 ],
 [
 2001,
 20.749 
 ],
 [
 2002,
 17.215 
 ],
 [
 2003,
 18.523 
 ],
 [
 2004,
 23.846 
 ],
 [
 2005,
 17.026 
 ],
 [
 2006,
 18.14 
 ],
 [
 2007,
 19.409 
 ],
 [
 2008,
 17.985 
 ],
 [
 2009,
 18.058 
 ],
 [
 2010,
 16.117 
 ],
 [
 2011,
 16.762 
 ],
 [
 2012,
 17.115 
 ],
 [
 2014,
 18.221 
 ] 
 ] 
 },
 {
 "family": "Acanthuridae",
 "species": "Acanthurus coeruleus",
 "occurrence": [
 [
 2000,
 0.78357 
 ],
 [
 2001,
 0.73931 
 ],
 [
 2002,
 0.7498 
 ],
 [
 2003,
 0.76061 
 ],
 [
 2004,
 0.75207 
 ],
 [
 2005,
 0.69545 
 ],
 [
 2006,
 0.69399 
 ],
 [
 2007,
 0.82137 
 ],
 [
 2008,
 0.86312 
 ],
 [
 2009,
 0.83664 
 ],
 [
 2010,
 0.72515 
 ],
 [
 2011,
 0.84308 
 ],
 [
 2012,
 0.8547 
 ],
 [
 2014,
 0.79202 
 ] 
 ],
 "density": [
 [
 2000,
 2.7122 
 ],
 [
 2001,
 2.8797 
 ],
 [
 2002,
 2.4126 
 ],
 [
 2003,
 2.9296 
 ],
 [
 2004,
 4.0752 
 ],
 [
 2005,
 2.8701 
 ],
 [
 2006,
 2.395 
 ],
 [
 2007,
 2.759 
 ],
 [
 2008,
 3.3149 
 ],
 [
 2009,
 2.505 
 ],
 [
 2010,
 2.4385 
 ],
 [
 2011,
 3.0506 
 ],
 [
 2012,
 3.2911 
 ],
 [
 2014,
 3.6101 
 ] 
 ],
 "abundance": [
 [
 2000,
 1.0371e+07 
 ],
 [
 2001,
 1.1012e+07 
 ],
 [
 2002,
 9.2252e+06 
 ],
 [
 2003,
 1.1202e+07 
 ],
 [
 2004,
 1.547e+07 
 ],
 [
 2005,
 1.0975e+07 
 ],
 [
 2006,
 9.1581e+06 
 ],
 [
 2007,
 1.055e+07 
 ],
 [
 2008,
 1.2675e+07 
 ],
 [
 2009,
 9.5786e+06 
 ],
 [
 2010,
 9.3242e+06 
 ],
 [
 2011,
 1.1665e+07 
 ],
 [
 2012,
 1.2585e+07 
 ],
 [
 2014,
 1.3802e+07 
 ] 
 ],
 "biomass": [
 [
 2000,
 1.0446e+06 
 ],
 [
 2001,
 1.9089e+06 
 ],
 [
 2002,
 1.3462e+06 
 ],
 [
 2003,
 1.6528e+06 
 ],
 [
 2004,
 2.7397e+06 
 ],
 [
 2005,
 1.4172e+06 
 ],
 [
 2006,
 1.0186e+06 
 ],
 [
 2007,
 1.4532e+06 
 ],
 [
 2008,
 2.3337e+06 
 ],
 [
 2009,
 1.2383e+06 
 ],
 [
 2010,
 1.1401e+06 
 ],
 [
 2011,
 1.4064e+06 
 ],
 [
 2012,
 1.4745e+06 
 ],
 [
 2014,
 1.5667e+06 
 ] 
 ],
 "lbar": [
 [
 2000,
 13.45 
 ],
 [
 2001,
 15.897 
 ],
 [
 2002,
 15.249 
 ],
 [
 2003,
 14.853 
 ],
 [
 2004,
 17.292 
 ],
 [
 2005,
 14.172 
 ],
 [
 2006,
 13.933 
 ],
 [
 2007,
 14.728 
 ],
 [
 2008,
 16.492 
 ],
 [
 2009,
 14.889 
 ],
 [
 2010,
 14.38 
 ],
 [
 2011,
 14.976 
 ],
 [
 2012,
 14.278 
 ],
 [
 2014,
 14.894 
 ] 
 ] 
 },
 {
 "family": "Aulostomidae",
 "species": "Aulostomus maculatus",
 "occurrence": [
 [
 2000,
 0.1272 
 ],
 [
 2001,
 0.13461 
 ],
 [
 2002,
 0.18459 
 ],
 [
 2003,
 0.24074 
 ],
 [
 2004,
 0.1599 
 ],
 [
 2005,
 0.19523 
 ],
 [
 2006,
 0.11371 
 ],
 [
 2007,
 0.12539 
 ],
 [
 2008,
 0.19468 
 ],
 [
 2009,
 0.17305 
 ],
 [
 2010,
 0.13336 
 ],
 [
 2011,
 0.17448 
 ],
 [
 2012,
 0.17934 
 ],
 [
 2014,
 0.14389 
 ] 
 ],
 "density": [
 [
 2000,
 0.10144 
 ],
 [
 2001,
 0.086301 
 ],
 [
 2002,
 0.15093 
 ],
 [
 2003,
 0.21036 
 ],
 [
 2004,
 0.10388 
 ],
 [
 2005,
 0.17275 
 ],
 [
 2006,
 0.097899 
 ],
 [
 2007,
 0.076719 
 ],
 [
 2008,
 0.14163 
 ],
 [
 2009,
 0.11548 
 ],
 [
 2010,
 0.089438 
 ],
 [
 2011,
 0.13957 
 ],
 [
 2012,
 0.12473 
 ],
 [
 2014,
 0.11118 
 ] 
 ],
 "abundance": [
 [
 2000,
 3.8788e+05 
 ],
 [
 2001,
 3.3e+05 
 ],
 [
 2002,
 5.7712e+05 
 ],
 [
 2003,
 8.0439e+05 
 ],
 [
 2004,
 3.9433e+05 
 ],
 [
 2005,
 6.6056e+05 
 ],
 [
 2006,
 3.7435e+05 
 ],
 [
 2007,
 2.9336e+05 
 ],
 [
 2008,
 5.4158e+05 
 ],
 [
 2009,
 4.4158e+05 
 ],
 [
 2010,
 3.4199e+05 
 ],
 [
 2011,
 5.3368e+05 
 ],
 [
 2012,
 4.7695e+05 
 ],
 [
 2014,
 4.2508e+05 
 ] 
 ],
 "biomass": [
 [
 2000,
 63183 
 ],
 [
 2001,
 45791 
 ],
 [
 2002,
 1.3161e+05 
 ],
 [
 2003,
 2.2183e+05 
 ],
 [
 2004,
 81265 
 ],
 [
 2005,
 1.0988e+05 
 ],
 [
 2006,
 73509 
 ],
 [
 2007,
 57803 
 ],
 [
 2008,
 1.2137e+05 
 ],
 [
 2009,
 1.3931e+05 
 ],
 [
 2010,
 73680 
 ],
 [
 2011,
 78248 
 ],
 [
 2012,
 1.1832e+05 
 ],
 [
 2014,
 61002 
 ] 
 ],
 "lbar": [
 [
 2000,
 23.531 
 ],
 [
 2001,
 21.639 
 ],
 [
 2002,
 32.488 
 ],
 [
 2003,
 37.782 
 ],
 [
 2004,
 36.735 
 ],
 [
 2005,
 33.867 
 ],
 [
 2006,
 34.095 
 ],
 [
 2007,
 34.887 
 ],
 [
 2008,
 36.101 
 ],
 [
 2009,
 37.99 
 ],
 [
 2010,
 36.672 
 ],
 [
 2011,
 33.371 
 ],
 [
 2012,
 38.038 
 ],
 [
 2014,
 32.644 
 ] 
 ] 
 },
 {
 "family": "Carangidae",
 "species": "Caranx bartholomaei",
 "occurrence": [
 [
 2000,
 0.096879 
 ],
 [
 2001,
 0.10888 
 ],
 [
 2002,
 0.087455 
 ],
 [
 2003,
 0.098959 
 ],
 [
 2004,
 0.15375 
 ],
 [
 2005,
 0.12331 
 ],
 [
 2006,
 0.086351 
 ],
 [
 2007,
 0.081312 
 ],
 [
 2008,
 0.11159 
 ],
 [
 2009,
 0.080467 
 ],
 [
 2010,
 0.03298 
 ],
 [
 2011,
 0.048466 
 ],
 [
 2012,
 0.092787 
 ],
 [
 2014,
 0.051212 
 ] 
 ],
 "density": [
 [
 2000,
 0.17253 
 ],
 [
 2001,
 0.77724 
 ],
 [
 2002,
 0.32705 
 ],
 [
 2003,
 0.32147 
 ],
 [
 2004,
 0.80462 
 ],
 [
 2005,
 0.44275 
 ],
 [
 2006,
 0.40313 
 ],
 [
 2007,
 0.30559 
 ],
 [
 2008,
 0.52685 
 ],
 [
 2009,
 0.24542 
 ],
 [
 2010,
 0.062845 
 ],
 [
 2011,
 0.13361 
 ],
 [
 2012,
 0.27209 
 ],
 [
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 2010,
 6.6977 
 ],
 [
 2011,
 7.1586 
 ],
 [
 2012,
 7.3881 
 ],
 [
 2014,
 8.0068 
 ] 
 ] 
 },
 {
 "family": "Serranidae",
 "species": "Mycteroperca bonaci",
 "occurrence": [
 [
 2000,
 0.16481 
 ],
 [
 2001,
 0.23887 
 ],
 [
 2002,
 0.21167 
 ],
 [
 2003,
 0.12532 
 ],
 [
 2004,
 0.14652 
 ],
 [
 2005,
 0.19558 
 ],
 [
 2006,
 0.11881 
 ],
 [
 2007,
 0.16734 
 ],
 [
 2008,
 0.17989 
 ],
 [
 2009,
 0.13985 
 ],
 [
 2010,
 0.17698 
 ],
 [
 2011,
 0.26221 
 ],
 [
 2012,
 0.1835 
 ],
 [
 2014,
 0.09011 
 ] 
 ],
 "density": [
 [
 2000,
 0.14683 
 ],
 [
 2001,
 0.23375 
 ],
 [
 2002,
 0.19662 
 ],
 [
 2003,
 0.09759 
 ],
 [
 2004,
 0.12825 
 ],
 [
 2005,
 0.21131 
 ],
 [
 2006,
 0.099235 
 ],
 [
 2007,
 0.14532 
 ],
 [
 2008,
 0.12504 
 ],
 [
 2009,
 0.10276 
 ],
 [
 2010,
 0.13774 
 ],
 [
 2011,
 0.24516 
 ],
 [
 2012,
 0.14148 
 ],
 [
 2014,
 0.054024 
 ] 
 ],
 "abundance": [
 [
 2000,
 5.6143e+05 
 ],
 [
 2001,
 8.9381e+05 
 ],
 [
 2002,
 7.5185e+05 
 ],
 [
 2003,
 3.7317e+05 
 ],
 [
 2004,
 4.8688e+05 
 ],
 [
 2005,
 8.0802e+05 
 ],
 [
 2006,
 3.7945e+05 
 ],
 [
 2007,
 5.5568e+05 
 ],
 [
 2008,
 4.7812e+05 
 ],
 [
 2009,
 3.9292e+05 
 ],
 [
 2010,
 5.267e+05 
 ],
 [
 2011,
 9.3745e+05 
 ],
 [
 2012,
 5.41e+05 
 ],
 [
 2014,
 2.0654e+05 
 ] 
 ],
 "biomass": [
 [
 2000,
 3.7854e+05 
 ],
 [
 2001,
 1.2269e+06 
 ],
 [
 2002,
 2.3374e+06 
 ],
 [
 2003,
 9.6363e+05 
 ],
 [
 2004,
 3.149e+06 
 ],
 [
 2005,
 2.0727e+06 
 ],
 [
 2006,
 1.0946e+06 
 ],
 [
 2007,
 2.0523e+06 
 ],
 [
 2008,
 6.2671e+05 
 ],
 [
 2009,
 5.9033e+05 
 ],
 [
 2010,
 7.6039e+05 
 ],
 [
 2011,
 1.6167e+06 
 ],
 [
 2012,
 8.2505e+05 
 ],
 [
 2014,
 6.4287e+05 
 ] 
 ],
 "lbar": [
 [
 2000,
 21.977 
 ],
 [
 2001,
 32.053 
 ],
 [
 2002,
 45.18 
 ],
 [
 2003,
 42.439 
 ],
 [
 2004,
 57.73 
 ],
 [
 2005,
 45.939 
 ],
 [
 2006,
 40.288 
 ],
 [
 2007,
 47.992 
 ],
 [
 2008,
 37.32 
 ],
 [
 2009,
 39.218 
 ],
 [
 2010,
 37.232 
 ],
 [
 2011,
 39.672 
 ],
 [
 2012,
 40.302 
 ],
 [
 2014,
 51.641 
 ] 
 ] 
 },
 {
 "family": "Serranidae",
 "species": "Serranus tigrinus",
 "occurrence": [
 [
 2000,
 0.33778 
 ],
 [
 2001,
 0.3588 
 ],
 [
 2002,
 0.35624 
 ],
 [
 2003,
 0.47348 
 ],
 [
 2004,
 0.4572 
 ],
 [
 2005,
 0.28792 
 ],
 [
 2006,
 0.3096 
 ],
 [
 2007,
 0.41489 
 ],
 [
 2008,
 0.3665 
 ],
 [
 2009,
 0.43506 
 ],
 [
 2010,
 0.40895 
 ],
 [
 2011,
 0.44186 
 ],
 [
 2012,
 0.38127 
 ],
 [
 2014,
 0.35105 
 ] 
 ],
 "density": [
 [
 2000,
 0.27366 
 ],
 [
 2001,
 0.30569 
 ],
 [
 2002,
 0.40864 
 ],
 [
 2003,
 0.45807 
 ],
 [
 2004,
 0.5162 
 ],
 [
 2005,
 0.33804 
 ],
 [
 2006,
 0.29725 
 ],
 [
 2007,
 0.38371 
 ],
 [
 2008,
 0.34508 
 ],
 [
 2009,
 0.41056 
 ],
 [
 2010,
 0.40811 
 ],
 [
 2011,
 0.49263 
 ],
 [
 2012,
 0.40761 
 ],
 [
 2014,
 0.38261 
 ] 
 ],
 "abundance": [
 [
 2000,
 1.0464e+06 
 ],
 [
 2001,
 1.1689e+06 
 ],
 [
 2002,
 1.5625e+06 
 ],
 [
 2003,
 1.7516e+06 
 ],
 [
 2004,
 1.9596e+06 
 ],
 [
 2005,
 1.2926e+06 
 ],
 [
 2006,
 1.1366e+06 
 ],
 [
 2007,
 1.4672e+06 
 ],
 [
 2008,
 1.3195e+06 
 ],
 [
 2009,
 1.5699e+06 
 ],
 [
 2010,
 1.5605e+06 
 ],
 [
 2011,
 1.8837e+06 
 ],
 [
 2012,
 1.5586e+06 
 ],
 [
 2014,
 1.4628e+06 
 ] 
 ],
 "biomass": [
 [
 2000,
 5053.4 
 ],
 [
 2001,
 5278.1 
 ],
 [
 2002,
 10793 
 ],
 [
 2003,
 10861 
 ],
 [
 2004,
 12289 
 ],
 [
 2005,
 8949.5 
 ],
 [
 2006,
 6028.6 
 ],
 [
 2007,
 7532.8 
 ],
 [
 2008,
 8396.6 
 ],
 [
 2009,
 6961.1 
 ],
 [
 2010,
 8676.3 
 ],
 [
 2011,
 10418 
 ],
 [
 2012,
 7959.7 
 ],
 [
 2014,
 8528.5 
 ] 
 ],
 "lbar": [
 [
 2000,
 2.8574 
 ],
 [
 2001,
 5.0303 
 ],
 [
 2002,
 5.2962 
 ],
 [
 2003,
 7.0458 
 ],
 [
 2004,
 6.879 
 ],
 [
 2005,
 7.0384 
 ],
 [
 2006,
 6.5286 
 ],
 [
 2007,
 6.4981 
 ],
 [
 2008,
 6.621 
 ],
 [
 2009,
 6.2777 
 ],
 [
 2010,
 6.5629 
 ],
 [
 2011,
 6.8701 
 ],
 [
 2012,
 6.6566 
 ],
 [
 2014,
 6.7859 
 ] 
 ] 
 },
 {
 "family": "Sphyraenidae",
 "species": "Sphyraena barracuda",
 "occurrence": [
 [
 2000,
 0.059059 
 ],
 [
 2001,
 0.11199 
 ],
 [
 2002,
 0.12071 
 ],
 [
 2003,
 0.092761 
 ],
 [
 2004,
 0.16237 
 ],
 [
 2005,
 0.10694 
 ],
 [
 2006,
 0.10773 
 ],
 [
 2007,
 0.086243 
 ],
 [
 2008,
 0.082791 
 ],
 [
 2009,
 0.066055 
 ],
 [
 2010,
 0.075084 
 ],
 [
 2011,
 0.071501 
 ],
 [
 2012,
 0.08202 
 ],
 [
 2014,
 0.072671 
 ] 
 ],
 "density": [
 [
 2000,
 0.052429 
 ],
 [
 2001,
 0.10313 
 ],
 [
 2002,
 0.17272 
 ],
 [
 2003,
 0.072928 
 ],
 [
 2004,
 0.13308 
 ],
 [
 2005,
 0.11302 
 ],
 [
 2006,
 0.21192 
 ],
 [
 2007,
 0.061622 
 ],
 [
 2008,
 0.081968 
 ],
 [
 2009,
 0.055263 
 ],
 [
 2010,
 0.10042 
 ],
 [
 2011,
 0.12517 
 ],
 [
 2012,
 0.069901 
 ],
 [
 2014,
 0.08251 
 ] 
 ],
 "abundance": [
 [
 2000,
 2.0048e+05 
 ],
 [
 2001,
 3.9434e+05 
 ],
 [
 2002,
 6.6045e+05 
 ],
 [
 2003,
 2.7886e+05 
 ],
 [
 2004,
 5.0518e+05 
 ],
 [
 2005,
 4.3215e+05 
 ],
 [
 2006,
 8.1034e+05 
 ],
 [
 2007,
 2.3563e+05 
 ],
 [
 2008,
 3.1343e+05 
 ],
 [
 2009,
 2.1131e+05 
 ],
 [
 2010,
 3.8398e+05 
 ],
 [
 2011,
 4.7863e+05 
 ],
 [
 2012,
 2.6729e+05 
 ],
 [
 2014,
 3.1545e+05 
 ] 
 ],
 "biomass": [
 [
 2000,
 6.1294e+05 
 ],
 [
 2001,
 1.7963e+06 
 ],
 [
 2002,
 3.7243e+06 
 ],
 [
 2003,
 1.7162e+06 
 ],
 [
 2004,
 3.5823e+06 
 ],
 [
 2005,
 2.5775e+06 
 ],
 [
 2006,
 4.0887e+06 
 ],
 [
 2007,
 1.7491e+06 
 ],
 [
 2008,
 1.6578e+06 
 ],
 [
 2009,
 1.0137e+06 
 ],
 [
 2010,
 1.6437e+06 
 ],
 [
 2011,
 1.7608e+06 
 ],
 [
 2012,
 1.4953e+06 
 ],
 [
 2014,
 1.1818e+06 
 ] 
 ],
 "lbar": [
 [
 2000,
 82.518 
 ],
 [
 2001,
 66.766 
 ],
 [
 2002,
 80.586 
 ],
 [
 2003,
 86.549 
 ],
 [
 2004,
 95.377 
 ],
 [
 2005,
 88.859 
 ],
 [
 2006,
 95.907 
 ],
 [
 2007,
 95.253 
 ],
 [
 2008,
 88.195 
 ],
 [
 2009,
 84.683 
 ],
 [
 2010,
 83.358 
 ],
 [
 2011,
 81.06 
 ],
 [
 2012,
 96.039 
 ],
 [
 2014,
 78.094 
 ] 
 ] 
 },
 {
 "family": "Tetraodontidae",
 "species": "Canthigaster rostrata",
 "occurrence": [
 [
 2000,
 0.51638 
 ],
 [
 2001,
 0.50084 
 ],
 [
 2002,
 0.44229 
 ],
 [
 2003,
 0.4639 
 ],
 [
 2004,
 0.52947 
 ],
 [
 2005,
 0.40195 
 ],
 [
 2006,
 0.45637 
 ],
 [
 2007,
 0.59468 
 ],
 [
 2008,
 0.55238 
 ],
 [
 2009,
 0.54205 
 ],
 [
 2010,
 0.53407 
 ],
 [
 2011,
 0.64893 
 ],
 [
 2012,
 0.71365 
 ],
 [
 2014,
 0.55068 
 ] 
 ],
 "density": [
 [
 2000,
 0.63873 
 ],
 [
 2001,
 0.54012 
 ],
 [
 2002,
 0.51023 
 ],
 [
 2003,
 0.40056 
 ],
 [
 2004,
 0.48293 
 ],
 [
 2005,
 0.4795 
 ],
 [
 2006,
 0.60871 
 ],
 [
 2007,
 0.69417 
 ],
 [
 2008,
 0.62883 
 ],
 [
 2009,
 0.58309 
 ],
 [
 2010,
 0.55473 
 ],
 [
 2011,
 1.1584 
 ],
 [
 2012,
 1.3476 
 ],
 [
 2014,
 0.9631 
 ] 
 ],
 "abundance": [
 [
 2000,
 2.4424e+06 
 ],
 [
 2001,
 2.0653e+06 
 ],
 [
 2002,
 1.951e+06 
 ],
 [
 2003,
 1.5317e+06 
 ],
 [
 2004,
 1.8333e+06 
 ],
 [
 2005,
 1.8335e+06 
 ],
 [
 2006,
 2.3276e+06 
 ],
 [
 2007,
 2.6543e+06 
 ],
 [
 2008,
 2.4045e+06 
 ],
 [
 2009,
 2.2296e+06 
 ],
 [
 2010,
 2.1212e+06 
 ],
 [
 2011,
 4.4294e+06 
 ],
 [
 2012,
 5.1531e+06 
 ],
 [
 2014,
 3.6822e+06 
 ] 
 ],
 "biomass": [
 [
 2000,
 4280.5 
 ],
 [
 2001,
  4639 
 ],
 [
 2002,
 4326.3 
 ],
 [
 2003,
 3249.9 
 ],
 [
 2004,
 5313.1 
 ],
 [
 2005,
 4741.9 
 ],
 [
 2006,
 5728.2 
 ],
 [
 2007,
 7376.3 
 ],
 [
 2008,
 5281.4 
 ],
 [
 2009,
 4566.1 
 ],
 [
 2010,
 4267.9 
 ],
 [
 2011,
 8768.9 
 ],
 [
 2012,
 8552.6 
 ],
 [
 2014,
  9342 
 ] 
 ],
 "lbar": [
 [
 2000,
 2.307 
 ],
 [
 2001,
 3.107 
 ],
 [
 2002,
 3.4806 
 ],
 [
 2003,
 4.3401 
 ],
 [
 2004,
 5.2176 
 ],
 [
 2005,
 4.8129 
 ],
 [
 2006,
 4.7286 
 ],
 [
 2007,
 4.9507 
 ],
 [
 2008,
 4.6703 
 ],
 [
 2009,
 4.4957 
 ],
 [
 2010,
 4.3964 
 ],
 [
 2011,
 4.5159 
 ],
 [
 2012,
 4.0956 
 ],
 [
 2014,
 4.8432 
 ] 
 ] 
 } 
 ]

	<!DOCTYPE html>
	<html class="ocks-org do-not-copy">
	<meta charset="utf-8">
	<title>RVC Top 75 Species </title>
	<style>

	@import url(../style.css?aea6f0a);

	body {
	background-color: white;
	}

	#chart {
	margin-left: -40px;
	height: 506px;
	}


	text {
	font: 10px sans-serif;
	}

	.dot {
	stroke: #000;
	}

	.axis path, .axis line {
	fill: none;
	stroke: #000;
	shape-rendering: crispEdges;
	}

	.label {
	fill: #777;
	}

	.year.label {
	font: 500 196px "Helvetica Neue";
	fill: #ddd;
	}

	.year.label.active {
	fill: #aaa;
	}

	.overlay {
	fill: none;
	pointer-events: all;
	cursor: ew-resize;
	}

	</style>

	<header>
	</header>

	<h1>RVC Top 75 Species</h1>

	<p id="chart"></p>

	<aside>Mouseover the year to move forward and backwards through time.</aside>


	<script src="//d3js.org/d3.v3.min.js" charset="utf-8"></script></script>
	<script>

	// Various accessors that specify the four dimensions of data to visualize.
	function x(d) { return d.occurrence; }
	function y(d) { return d.lbar; }
	function radius(d) { return d.biomass; }
	function color(d) { return d.family; }
	function key(d) { return d.species; }

	// Chart dimensions.
	var margin = {top: 19.5, right: 19.5, bottom: 19.5, left: 39.5},
	width = 960 - margin.right,
	height = 500 - margin.top - margin.bottom;

	// Various scales. These domains make assumptions of data, naturally.
	var xScale = d3.scale.linear().domain([0, 1]).range([0, width]),
	yScale = d3.scale.linear().domain([1, 50]).range([height, 0]),
	radiusScale = d3.scale.linear().domain([300000, 2500000]).range([5, 40]),
	colorScale = d3.scale.category20();

	// The x & y axes.
	var xAxis = d3.svg.axis().orient("bottom").scale(xScale).ticks(12, d3.format(",d")),
	yAxis = d3.svg.axis().scale(yScale).orient("right");

	// Create the SVG container and set the origin.
	var svg = d3.select("#chart").append("svg")
	.attr("width", width + margin.left + margin.right)
	.attr("height", height + margin.top + margin.bottom)
	.append("g")
	.attr("transform", "translate(" + margin.left + "," + margin.top + ")");

	// Add the x-axis.
	svg.append("g")
	.attr("class", "x axis")
	.attr("transform", "translate(0," + height + ")")
	.call(xAxis);

	// Add the y-axis.
	svg.append("g")
	.attr("class", "y axis")
	.call(yAxis);

	// Add an x-axis label.
	svg.append("text")
	.attr("class", "x label")
	.attr("text-anchor", "end")
	.attr("x", width)
	.attr("y", height - 6)
	.text("Occurrence");

	// Add a y-axis label.
	svg.append("text")
	.attr("class", "y label")
	.attr("text-anchor", "end")
	.attr("y", 6)
	.attr("dy", ".75em")
	.attr("transform", "rotate(-90)")
	.text("lbar");

	// Add the year label; the value is set on transition.
	var label = svg.append("text")
	.attr("class", "year label")
	.attr("text-anchor", "end")
	.attr("y", height - (.65*height))
	.attr("x", width)
	.text(2000);

	// Load the data.
	d3.json("RVCData.json", function(nations) {

	// A bisector since many nation's data is sparsely-defined.
	var bisect = d3.bisector(function(d) { return d[0]; });

	// Add a dot per nation. Initialize the data at 1800, and set the colors.
	var dot = svg.append("g")
	.attr("class", "dots")
	.selectAll(".dot")
	.data(interpolateData(2000))
	.enter().append("circle")
	.attr("class", function(d) { return "dot" + " " + d.family })
	.style("fill", function(d) { return colorScale(color(d)); })
	.call(position)
	.sort(order)
	.on("click", function(d) {
	var fam = d.family;
	d3.selectAll(".dot").style("opacity", 1);
	d3.selectAll(".dot").filter("*:not(." + fam + ")").style("opacity", .05);
	});

	// Add a title.
	dot.append("title")
	.text(function(d) { return d.species; });

	// Add an overlay for the year label.
	var box = label.node().getBBox();

	var overlay = svg.append("rect")
	.attr("class", "overlay")
	.attr("x", box.x)
	.attr("y", box.y)
	.attr("width", box.width)
	.attr("height", box.height)
	.on("mouseover", enableInteraction);

	// Start a transition that interpolates the data based on year.
	svg.transition()
	.duration(30000)
	.ease("linear")
	.tween("year", tweenYear)
	.each("end", enableInteraction);

	// Positions the dots based on data.
	function position(dot) {
	dot .attr("cx", function(d) { return xScale(x(d)); })
	.attr("cy", function(d) { return yScale(y(d)); })
	.attr("r", function(d) { return radiusScale(radius(d)); });
	}

	// Defines a sort order so that the smallest dots are drawn on top.
	function order(a, b) {
	return radius(b) - radius(a);
	}

	// After the transition finishes, you can mouseover to change the year.
	function enableInteraction() {
	var yearScale = d3.scale.linear()
	.domain([2000, 2014])
	.range([box.x + 10, box.x + box.width - 10])
	.clamp(true);

	// Cancel the current transition, if any.
	svg.transition().duration(0);

	overlay
	.on("mouseover", mouseover)
	.on("mouseout", mouseout)
	.on("mousemove", mousemove)
	.on("touchmove", mousemove);

	function mouseover() {
	label.classed("active", true);
	}

	function mouseout() {
	label.classed("active", false);
	}

	function mousemove() {
	displayYear(yearScale.invert(d3.mouse(this)[0]));
	}
	}

	// Tweens the entire chart by first tweening the year, and then the data.
	// For the interpolated data, the dots and label are redrawn.
	function tweenYear() {
	var year = d3.interpolateNumber(2000, 2014);
	return function(t) { displayYear(year(t)); };
	}

	// Updates the display to show the specified year.
	function displayYear(year) {
	dot.data(interpolateData(year), key).call(position).sort(order);
	label.text(Math.round(year));
	}

	// Interpolates the dataset for the given (fractional) year.
	function interpolateData(year) {
	return nations.map(function(d) {
	return {
	species: d.species,
	family: d.family,
	lbar: interpolateValues(d.lbar, year),
	biomass: interpolateValues(d.biomass, year),
	occurrence: interpolateValues(d.occurrence, year)
	};
	});
	}

	// Finds (and possibly interpolates) the value for the specified year.
	function interpolateValues(values, year) {
	var i = bisect.left(values, year, 0, values.length - 1),
	a = values[i];
	if (i > 0) {
	var b = values[i - 1],
	t = (year - a[0]) / (b[0] - a[0]);
	return a[1] * (1 - t) + b[1] * t;
	}
	return a[1];
	}
	});

	</script>
	<script>

	GoogleAnalyticsObject = "ga", ga = function() { ga.q.push(arguments); }, ga.q = [], ga.l = +new Date;
	ga("create", "UA-48272912-3", "ocks.org");
	ga("send", "pageview");

	</script>
	<script async src="//www.google-analytics.com/analytics.js"></script>
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