Skip to content

Instantly share code, notes, and snippets.

@kapsakcj
Created September 21, 2023 16:21
Show Gist options
  • Select an option

  • Save kapsakcj/58fc633468e1d39a0ca51ee24ce464d5 to your computer and use it in GitHub Desktop.

Select an option

Save kapsakcj/58fc633468e1d39a0ca51ee24ce464d5 to your computer and use it in GitHub Desktop.
translate-PNUSA-to-SRR.txt
# jotting down so I don't forget this one!
# originally shared from Erin Young
# requires NCBI e-utils commands
esearch -db sra -query $PNUSA </dev/null | efetch -format docsum | xtract -pattern Runs -element Run@acc
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment