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January 27, 2026 13:05
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(partial) EasyBuild log for failed build of /tmp/eb-7z5gniay/files_pr25127/l/LAMMPS/LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb (PR(s) #25127)
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| create_atoms CPU = 0.001 seconds | |
| 3000 atoms in group type1 | |
| 1000 atoms in group type2 | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Neighbor list info ... | |
| update: every = 1 steps, delay = 10 steps, check = yes | |
| max neighbors/atom: 2000, page size: 100000 | |
| master list distance cutoff = 2.3 | |
| ghost atom cutoff = 5 | |
| binsize = 1.15, bins = 9 9 9 | |
| 1 neighbor lists, perpetual/occasional/extra = 1 0 0 | |
| (1) pair lj/cut, perpetual | |
| attributes: half, newton on | |
| pair build: half/bin/atomonly/newton | |
| stencil: half/bin/3d | |
| bin: standard | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 0 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_r0 | |
| 1000 | |
| Loop time of 1.43e-06 on 1 procs for 0 steps with 4000 atoms | |
| 209.8% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 1.43e-06 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_1 0% Error. Sum of all voronoi cells is the simulation cell volume | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 0 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_r0 c_r1 | |
| 1000 0 | |
| Loop time of 1.371e-06 on 1 procs for 0 steps with 4000 atoms | |
| 145.9% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 1.371e-06 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_2a 0% Error. Sum of all only_group voronoi cells is the simulation cell volume | |
| TEST_2b 0% Error. Sum of all only_group not included voronoi cells is zero | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 0 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_r0 | |
| 416357.42 | |
| Loop time of 1.38e-06 on 1 procs for 0 steps with 4000 atoms | |
| 144.9% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 1.38e-06 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_3 41536% Error. Sum of all radius voronoi cells is the simulation cell volume | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 0 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_v1[1] c_v1[2] c_v1[3] c_v1[4] c_v1[5] c_v1[6] c_v1[7] | |
| 0 0 0 12000 0 0 0 | |
| 0 0 0 12000 0 0 0 | |
| Loop time of 0.265929 on 1 procs for 1 steps with 4000 atoms | |
| Performance: 0.325 ns/day, 73.869 hours/ns, 3.760 timesteps/s, 15.042 katom-step/s | |
| 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0.0032572 | 0.0032572 | 0.0032572 | 0.0 | 1.22 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0.00010343 | 0.00010343 | 0.00010343 | 0.0 | 0.04 | |
| Output | 0.26253 | 0.26253 | 0.26253 | 0.0 | 98.72 | |
| Modify | 1.293e-05 | 1.293e-05 | 1.293e-05 | 0.0 | 0.00 | |
| Other | | 2.313e-05 | | | 0.01 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_4a 0% Error. Edge histogram of a simple cubic lattice (6 sides. 4 edges per side) | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 1 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_v1[1] c_v1[2] c_v1[3] c_v1[4] c_v1[5] c_v1[6] c_v1[7] | |
| 0 0 0 48000 0 0 0 | |
| 0 0 0 48000 0 0 0 | |
| Loop time of 0.268934 on 1 procs for 1 steps with 4000 atoms | |
| Performance: 0.321 ns/day, 74.704 hours/ns, 3.718 timesteps/s, 14.874 katom-step/s | |
| 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0.0032493 | 0.0032493 | 0.0032493 | 0.0 | 1.21 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 9.946e-05 | 9.946e-05 | 9.946e-05 | 0.0 | 0.04 | |
| Output | 0.26556 | 0.26556 | 0.26556 | 0.0 | 98.75 | |
| Modify | 6e-07 | 6e-07 | 6e-07 | 0.0 | 0.00 | |
| Other | | 2.401e-05 | | | 0.01 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_4b 0% Error. Edge histogram of a face centered cubic lattice (12 sides. 4 edges per side) | |
| Displacing atoms ... | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 2 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_v1[1] c_v1[2] c_v1[3] c_v1[4] c_v1[5] c_v1[6] c_v1[7] | |
| 0 0 0 48000 0 0 0 | |
| 0 0 0 48000 0 0 0 | |
| Loop time of 0.315505 on 1 procs for 1 steps with 4000 atoms | |
| Performance: 0.274 ns/day, 87.640 hours/ns, 3.170 timesteps/s, 12.678 katom-step/s | |
| 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0.0048049 | 0.0048049 | 0.0048049 | 0.0 | 1.52 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 9.975e-05 | 9.975e-05 | 9.975e-05 | 0.0 | 0.03 | |
| Output | 0.31058 | 0.31058 | 0.31058 | 0.0 | 98.44 | |
| Modify | 7e-07 | 7e-07 | 7e-07 | 0.0 | 0.00 | |
| Other | | 2.419e-05 | | | 0.01 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_4c 0% Error. Edge histogram of a perturbed face centered cubic lattice with edge_threshold | |
| Deleted 4000 atoms, new total = 0 | |
| Lattice spacing in x,y,z = 1 1 1 | |
| Created 2000 atoms | |
| using lattice units in orthogonal box = (0 0 0) to (10 10 10) | |
| create_atoms CPU = 0.000 seconds | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 3 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_v1[1] c_v1[2] c_v1[3] c_v1[4] c_v1[5] c_v1[6] c_v1[7] | |
| 0 0 0 12000 0 16000 0 | |
| 0 0 0 12000 0 16000 0 | |
| Loop time of 0.119282 on 1 procs for 1 steps with 2000 atoms | |
| Performance: 0.724 ns/day, 33.134 hours/ns, 8.384 timesteps/s, 16.767 katom-step/s | |
| 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0.00078097 | 0.00078097 | 0.00078097 | 0.0 | 0.65 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 4.9381e-05 | 4.9381e-05 | 4.9381e-05 | 0.0 | 0.04 | |
| Output | 0.11844 | 0.11844 | 0.11844 | 0.0 | 99.29 | |
| Modify | 8.7e-07 | 8.7e-07 | 8.7e-07 | 0.0 | 0.00 | |
| Other | | 1.376e-05 | | | 0.01 | |
| Nlocal: 2000 ave 2000 max 2000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 14000 ave 14000 max 14000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 112000 ave 112000 max 112000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 112000 | |
| Ave neighs/atom = 56 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_4d 0% Error. Edge histogram of a body centered cubic lattice (truncated octahedron, 6 sides with 4 edges, 8 sides with 6 edges) | |
| Deleted 2000 atoms, new total = 0 | |
| Lattice spacing in x,y,z = 1 1 1 | |
| Created 4000 atoms | |
| using lattice units in orthogonal box = (0 0 0) to (10 10 10) | |
| create_atoms CPU = 0.000 seconds | |
| START5 | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 4 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 8.813 | 8.813 | 8.813 Mbytes | |
| c_r0 c_r1 v_d5a v_d5b v_d5c v_d5d | |
| 4000 4000 1 1 1 1 | |
| Loop time of 1.23e-06 on 1 procs for 0 steps with 4000 atoms | |
| 162.6% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 1.23e-06 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| Setting atom values ... | |
| 1 settings made for x | |
| 1 settings made for y | |
| 1 settings made for z | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 4 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 9.313 | 9.313 | 9.313 Mbytes | |
| c_r0 c_r1 v_d5a v_d5b v_d5c v_d5d | |
| 4000 4002 0 2 2 2 | |
| Loop time of 9.9e-07 on 1 procs for 0 steps with 4000 atoms | |
| 202.0% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 9.9e-07 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 399998 ave 399998 max 399998 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 399998 | |
| Ave neighs/atom = 99.9995 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| Setting atom values ... | |
| 1 settings made for x | |
| 1 settings made for y | |
| 1 settings made for z | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 4 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 9.313 | 9.313 | 9.313 Mbytes | |
| c_r0 c_r1 v_d5a v_d5b v_d5c v_d5d | |
| 4000 4000 1 1 1 1 | |
| Loop time of 9.1e-07 on 1 procs for 0 steps with 4000 atoms | |
| 219.8% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 9.1e-07 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 28000 ave 28000 max 28000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 400000 ave 400000 max 400000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 400000 | |
| Ave neighs/atom = 100 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_5 0% Error. Detection of vacancies and interstitials using the {occupation} keyword. | |
| Changing box ... | |
| triclinic box = (0 0 0) to (10 10 10) with tilt (0 0 0) | |
| Changing box ... | |
| triclinic box = (0 0 0) to (10 10 10) with tilt (5 0 0) | |
| WARNING: No fixes with time integration, atoms won't move | |
| For more information see https://docs.lammps.org/err0028 (src/verlet.cpp:60) | |
| Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule | |
| Neighbor list info ... | |
| update: every = 1 steps, delay = 10 steps, check = yes | |
| max neighbors/atom: 2000, page size: 100000 | |
| master list distance cutoff = 2.3 | |
| ghost atom cutoff = 5 | |
| binsize = 1.15, bins = 14 9 9 | |
| 1 neighbor lists, perpetual/occasional/extra = 1 0 0 | |
| (1) pair lj/cut, perpetual | |
| attributes: half, newton on | |
| pair build: half/bin/atomonly/newton/tri | |
| stencil: half/bin/3d/tri | |
| bin: standard | |
| Setting up Verlet run ... | |
| Unit style : metal | |
| Current step : 4 | |
| Time step : 0.001 | |
| Per MPI rank memory allocation (min/avg/max) = 12.35 | 12.35 | 12.35 Mbytes | |
| c_r0 | |
| 1000 | |
| Loop time of 1.46e-06 on 1 procs for 0 steps with 4000 atoms | |
| 205.5% CPU use with 1 MPI tasks x 1 OpenMP threads | |
| MPI task timing breakdown: | |
| Section | min time | avg time | max time |%varavg| %total | |
| --------------------------------------------------------------- | |
| Pair | 0 | 0 | 0 | 0.0 | 0.00 | |
| Neigh | 0 | 0 | 0 | 0.0 | 0.00 | |
| Comm | 0 | 0 | 0 | 0.0 | 0.00 | |
| Output | 0 | 0 | 0 | 0.0 | 0.00 | |
| Modify | 0 | 0 | 0 | 0.0 | 0.00 | |
| Other | | 1.46e-06 | | |100.00 | |
| Nlocal: 4000 ave 4000 max 4000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Nghost: 29600 ave 29600 max 29600 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Neighs: 432000 ave 432000 max 432000 min | |
| Histogram: 1 0 0 0 0 0 0 0 0 0 | |
| Total # of neighbors = 432000 | |
| Ave neighs/atom = 108 | |
| Neighbor list builds = 0 | |
| Dangerous builds = 0 | |
| TEST_6 0% Error. Sum of all voronoi cells is the triclinic simulation cell volume | |
| TEST_DONE | |
| Total wall time: 0:00:04 | |
| [node4303:1068651:0:1068651] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x10) | |
| ==== backtrace (tid:1068651) ==== | |
| 0 0x000000000003ebf0 __GI___sigaction() :0 | |
| 1 0x000000000028b8c1 set_handler() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Modules/signalmodule.c:133 | |
| 2 0x000000000000709a ffi_call_unix64() :0 | |
| 3 0x00000000000065f5 ffi_call_int() ffi64.c:0 | |
| 4 0x0000000000006c7d ffi_call() ???:0 | |
| 5 0x000000000000987d _call_function_pointer() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Modules/_ctypes/callproc.c:931 | |
| 6 0x000000000000987d _ctypes_callproc() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Modules/_ctypes/callproc.c:1273 | |
| 7 0x0000000000009188 PyCFuncPtr_call() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Modules/_ctypes/_ctypes.c:4167 | |
| 8 0x00000000001eb6db _PyObject_MakeTpCall() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Objects/call.c:240 | |
| 9 0x00000000001eb6db Py_DECREF() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Include/object.h:700 | |
| 10 0x00000000001eb6db _PyObject_MakeTpCall() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Objects/call.c:245 | |
| 11 0x0000000000112ec4 _PyEval_EvalFrameDefault() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/bytecodes.c:2706 | |
| 12 0x000000000026a9d9 PyEval_EvalCode() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/ceval.c:578 | |
| 13 0x000000000026a9d9 PyEval_EvalCode() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/ceval.c:579 | |
| 14 0x000000000028eae7 run_eval_code_obj() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/pythonrun.c:1722 | |
| 15 0x000000000028981b run_mod() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/pythonrun.c:1743 | |
| 16 0x000000000028981b Py_DECREF() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Include/object.h:700 | |
| 17 0x000000000028981b run_mod() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/pythonrun.c:1744 | |
| 18 0x000000000027c879 PyRun_StringFlags() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/pythonrun.c:1618 | |
| 19 0x000000000027c6dc PyRun_SimpleStringFlags() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Python/pythonrun.c:480 | |
| 20 0x000000000029a0e4 pymain_run_command() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Modules/main.c:255 | |
| 21 0x000000000029a0e4 Py_DECREF() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/./Include/object.h:700 | |
| 22 0x000000000029a0e4 pymain_run_command() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Modules/main.c:256 | |
| 23 0x000000000029a0e4 pymain_run_python() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Modules/main.c:620 | |
| 24 0x000000000029a0e4 Py_RunMain() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Modules/main.c:709 | |
| 25 0x0000000000253aa7 Py_BytesMain() /tmp/vsc40003/easybuild/Python/3.12.3/GCCcore-13.3.0/Python-3.12.3/Modules/main.c:763 | |
| 26 0x00000000000295d0 __libc_start_call_main() ???:0 | |
| 27 0x0000000000029680 __libc_start_main_alias_2() :0 | |
| 28 0x0000000000401065 _start() ???:0 | |
| ================================= | |
| -------------------------------------------------------------------------- | |
| prterun noticed that process rank 0 with PID 1068651 on node node4303 exited on | |
| signal 11 (Segmentation fault). | |
| -------------------------------------------------------------------------- | |
| ) (at easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/framework/easyblock.py:4404 in _sanity_check_step) | |
| == 2026-01-27 14:05:48,320 build_log.py:322 INFO ... (took 3 mins 15 secs) | |
| == 2026-01-27 14:05:48,322 config.py:772 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software | |
| == 2026-01-27 14:05:48,322 filetools.py:2152 INFO Removing lock /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_LAMMPS_22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.lock... | |
| == 2026-01-27 14:05:48,323 filetools.py:423 INFO Path /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_LAMMPS_22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.lock successfully removed. | |
| == 2026-01-27 14:05:48,323 filetools.py:2156 INFO Lock removed: /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_LAMMPS_22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.lock | |
| == 2026-01-27 14:05:48,324 easyblock.py:389 INFO Closing log for application name LAMMPS version 22Jul2025 |
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