Larsson Omberg larssono

##Load graph into memory g = new TinkerGraph() g.loadGraphSON('/Users/lom/Downloads/graph.json')

##Find all activities g.V('concreteType', 'activity').name nActivities = g.V('concreteType', 'activity').count()

	from bs4 import BeautifulSoup
	from urllib.request import urlopen, HTTPError
	import string
	import time
	import random

	url = 'https://www.mayoclinic.org/diseases-conditions/index?letter=%s'
	output = 'diseases.txt'

	fp = open(output,'w')

	import synapseclient
	import synapsebridgehelpers as sb

	FILTER_QUERY = "SELECT distinct healthCode FROM syn7841519 where substudyMemberships like '%Cirrhosis_pilot%'"
	ORIG_PROJECT = 'syn7838471'
	DESTINATION_PROJECT = 'syn18589808'
	TABLE_MAPPING = {'syn7841519': 'syn18632063'}


	syn = synapseclient.login()

	import pandas as pd
	import bridgeclient
	import synapseclient
	from multiprocessing.dummy import Pool
	from synapseutils.monitor import with_progress_bar

	mp = Pool(4)
	bridge = bridgeclient.bridgeConnector(<email>, <password>, study='journey-pro')
	syn = synapseclient.login()

	import synapseclient
	import pandas as pd
	from multiprocessing.dummy import Pool

	def with_progress_bar(func, totalCalls, prefix = '', postfix='', isBytes=False):
	"""Adds a progress bar to calls to func

	:param func: Function being wrapped with progress Bar
	:param totalCalls: total number of items/bytes when completed
	:param prefix: String printed before progress bar

	import synapseclient
	syn=synapseclient.Synapse()
	syn.login()

	def determineNewSampleCount():
	"""
	"""
	table = syn.tableQuery('SELECT * FROM syn3281840')
	df = table.asDataFrame()

	import sys
	import synapseclient


	syn=synapseclient.Synapse()
	syn.login(silent=True)
	md5 = sys.argv[1]

	files = syn.restGET('/entity/md5/%s' % md5)
	for f in files['results']:

	import pandas as pd
	import json
	graph = json.load(open('graph.json'))
	df = pd.DataFrame(graph['vertices'])
	df.to_csv('vertices.csv')

	"""Get permalink to git commit for a specific path.

	"""

	import os
	import ConfigParser
	import github

	def getToken(cfgfile="~/.pygit"):
	"""Authenticate using a token.

	ids = [i['file.id'] for i in syn.chunkedQuery('select id from file where parentId=="syn5521815"')]
	for i in ids:
	e = syn.get(i, downloadFile=False)
	e.properties.fileNameOverride = e.name
	syn.store(e, forceVersion=False)