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mjadkins/R_AWS_Load_Auto.R

Last active October 6, 2016 18:38
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R_AWS_Load_Auto.R
#!/bin/bash
# Update Ubuntu
sudo apt-get update
# Install gcc and clang C++ compilers
sudo apt-get install gcc
sudo apt-get install clang
#Install libcurl4
sudo apt-get install libcurl4-openssl-dev
# Update Ubuntu again
sudo apt-get update
# Ubuntu tends to install an earlier version of base R, so this forces installing the latest version
sudo sh -c 'echo "deb http://cran.rstudio.com/bin/linux/ubuntu trusty/" >> /etc/apt/sources.list'
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
gpg -a --export E084DAB9 | sudo apt-key add -
sudo apt-get update
sudo apt-get -y install r-base
sudo apt-get install r-cran-rjava
# Install s3cmd and awscli to access files on S3
sudo apt-get install s3cmd
sudo apt-get install awscli
# Install packages for R
sudo su - -c "R -e \"install.packages('scales', repos = 'https://www.stats.bris.ac.uk/R/')\""
sudo su - -c "R -e \"install.packages('ggplot2', repos = 'https://www.stats.bris.ac.uk/R/')\""
sudo su - -c "R -e \"install.packages('rstan', repos = 'https://www.stats.bris.ac.uk/R/')\""
# Transfer files from S3 bucket to EC2
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