Normand Cyr normcyr

Structural biologist, week-end coder. I love winter.

normcyr / splitser3d.cga

Created March 14, 2019 15:03

TopSpin AU program to split pseudo-3D dataset into separate 2D planes

	/*** ^^A --C++-- **********************************************/
	/* splitser3d 15.08.1990 */
	/****************************************************************/
	/* Short Description : */
	/* Program which splits a pseudo 3D ser file into single */
	/* fids starting with the expno which follows the ser file.*/
	/****************************************************************/
	/* Keywords : */
	/* splitser */
	/****************************************************************/

normcyr / menu_bieres_st-houblon_cdn

Last active November 20, 2018 19:06

Analyse le menu de bières au menu du St-Houblon Côte-des-Neiges

	#!/usr/bin/env python3
	# -- coding: utf-8 --

	from bs4 import BeautifulSoup
	import requests


	def charger_donnees(url_source):

	'''

normcyr / tar_SAXS_data.sh

Last active April 25, 2018 19:27

Create a GZIP compressed file containing SAXS data of a user

	#!/bin/bash
	# ------------------------------------------------------------------
	# [Normand Cyr] tar_data.sh
	# Create a GZIP compressed file containing SAXS data of a user
	# ------------------------------------------------------------------

	VERSION=0.1.0
	#USAGE="Usage: tar_data -ihv args"

	# name of the data file to create

normcyr / analysis.py

Last active March 2, 2018 18:20

	'''
	Script to analyze, plot and fit fluorescence anisotropy data
	Data file can be foudn here:
	https://www.normandcyr.com/data/data.csv
	'''

	import pandas as pd
	import matplotlib.pyplot as plt
	from scipy import optimize
	from math import sqrt

normcyr / ubuntu_unattended_upgrades_gmail.markdown

Created January 12, 2018 15:48 — forked from roydq/ubuntu_unattended_upgrades_gmail.markdown

Unattended upgrades on Ubuntu 14.04 with email notifications

Getting Started

Do yourself a favor and login as root to save yourself some time and headaches:

$ sudo su -

Install unattended-upgrades:

normcyr / norm-coot-preferences.py

Created December 20, 2017 20:24

	#Largely inspired from Oli's Coot customizations. Thanks Oliver!
	#https://github.com/olibclarke/coot-trimmings
	#
	#A few modifications to suit my preference.
	#
	#Usage: Copy to ~/.coot-preferences
	#When Coot is restarted, a new "Custom" menu will appear, with some new shortcuts for various model-building tasks.
	#Also there will be a bunch of new keyboard shortcuts - check "Extensions...Settings...Key bindings" for details.

	#**Settings**

normcyr / autocoot.sh

Last active August 3, 2017 19:06

autocoot - a script to launch coot and automatically open the latest PDB and MTZ files.

	#!/bin/sh
	# script to launch coot and automatically open the latest PDB and MTZ files
	# modified slightly from jpxtal (https://github.com/jpxtal/easypx)

	unset GTK_IM_MODULE

	pdb=$(ls -t *.pdb \| head -1)
	mtz=$(ls -t *.mtz \| head -1)

	echo coot --pdb $pdb --auto $mtz

normcyr / readPdbEntry-pypdb.py

Created August 2, 2017 15:26

Read a PDB entry using the pypdb module

	from pypdb import *

	#testPdb = '4xkl'
	#testPdb = '5v4k'
	testPdb = '3vtv'
	entityExtraInfo = get_all_info(testPdb)

	print(entityExtraInfo)
	print('\n')

normcyr / reddit-rss-feeder.sh

Last active August 1, 2017 15:11 — forked from Ironjanowar/reddit-popular.sh

Bash script to return the last 8 posts from a subreddit

	#!/bin/sh
	#
	# usage: ./reddit-rss-feeder.sh subreddit-name hot/new/rising/controversial/top/gilded
	# default subreddit-name = popular
	# default tab = hot
	# e.g.: ./reddit-rss-feeder.sh bikewrench new
	#
	# This script uses rsstail to retrieve latests entries from Reddit Bikecommuting rss feed
	# and process them through awk. Each update shows a timestamp separator.
	#

normcyr / .bashrc

Created January 25, 2016 18:28 — forked from marioBonales/.bashrc

Default .bashrc for ubuntu

	# ~/.bashrc: executed by bash(1) for non-login shells.
	# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
	# for examples

	# If not running interactively, don't do anything
	[ -z "$PS1" ] && return

	# don't put duplicate lines in the history. See bash(1) for more options
	# ... or force ignoredups and ignorespace
	HISTCONTROL=ignoredups:ignorespace