TDF is a binary format developed by the IGV team at Broad Institute.
Concepts
Oleg Shpynov olegs
olegs
/ analysis.ipynb
Created
January 12, 2024 11:07
Rapid unleashing of macrophage efferocytic capacity via transcriptional pause/release (commands.sh)
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
olegs
/ batch-fast-style-transfer.sh
Last active
January 20, 2019 11:56
Batch processing of fast-style-transfer for Udacity Deep Learning Nanodegree
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This is a bash script for batch images processing using https://github.com/lengstrom/fast-style-transfer code. | |
| # Used in udacity Deep Learning Nanodegree https://www.udacity.com/course/deep-learning-nanodegree--nd101 | |
| # Step 1. Configure environment | |
| # conda create -n style-transfer python=3 | |
| # activate style-transfer | |
| # conda install tensorflow scipy pillow | |
| # pip install moviepy | |
| # python -c "import imageio; imageio.plugins.ffmpeg.download()" | |
| # | |
| # Step 2. Close source code and have fun |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Small procedure to wait until all the tasks are finished on the qsub cluster | |
| # Example of usage: wait_complete $TASKS, where $TASKS is a task ids returned by qsub. | |
| wait_complete() | |
| { | |
| echo "Waiting for tasks..." | |
| for TASK in $@ | |
| do : | |
| echo -n "TASK: $TASK" | |
| # The task id is actually the first numbers in the string | |
| TASK_ID=$(echo ${TASK} | sed -e "s/\([0-9]*\).*/\1/") |