Pepe Flores ppflrs

SSH keypair setup for GitHub (or GitHub/GitLab/BitBucket, etc, etc)

Make sure there is at least one file in it (even just the README.md)

ssh-keygen -t rsa -C "[email protected]"

Select which database you want to download, here I will use the nucleotide database: nt.
Using rsync we will retrieve the name of the files composing the database from the NCBI server

rsync --list-only rsync://ftp.ncbi.nlm.nih.gov/blast/db/nt*.gz

Using grep we filter the Warning/Welcome message and retain only the compressed files

rsync --list-only rsync://ftp.ncbi.nlm.nih.gov/blast/db/nt*.gz | grep '.tar.gz'

rsync (Everyone seems to like -z, but it is much slower for me)

a: archive mode - rescursive, preserves owner, preserves permissions, preserves modification times, preserves group, copies symlinks as symlinks, preserves device files.
H: preserves hard-links
A: preserves ACLs

	_complete_ssh_hosts ()
	{
	COMPREPLY=()
	cur="${COMP_WORDS[COMP_CWORD]}"
	comp_ssh_hosts=`cat ~/.ssh/known_hosts \| \
	cut -f 1 -d ' ' \| \
	sed -e s/,.*//g \| \
	grep -v ^# \| \
	uniq \| \
	grep -v "\[" ;

	# ---------------------------------------------------------------------------
	#
	# Description: This file holds all my BASH configurations and aliases
	#
	# Sections:
	# 1. Environment Configuration
	# 2. Make Terminal Better (remapping defaults and adding functionality)
	# 3. File and Folder Management
	# 4. Searching
	# 5. Process Management

	# Short of learning how to actually configure OSX, here's a hacky way to use
	# GNU manpages for programs that are GNU ones, and fallback to OSX manpages otherwise
	alias man='_() { echo $1; man -M $(brew --prefix)/opt/coreutils/libexec/gnuman $1 1>/dev/null 2>&1; if [ "$?" -eq 0 ]; then man -M $(brew --prefix)/opt/coreutils/libexec/gnuman $1; else man $1; fi }; _'