romainGuiet
/ Stitch_Correction.bsh
Created
April 9, 2025 12:32
— forked from lacan/Stitch_Correction.bsh
[Stitching with Flatfield Correction] Takes a folder as input and processed all multiseries files there using a provided flatfield file #Beanshell #Stitching #Fiji #ImageJ #BIOP
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| //@File(label="Multiposition Files Directory",style="directory") image_directory | |
| //@String(value="Select a file for flat field correction or write none", visibility="MESSAGE") textFF | |
| //@File(label="Flatfield Correction File", value="none") ff_file | |
| //@int(label="Downsample Factor", style = "slider", min = "1", max = "16", stepSize = "1") downsample | |
| //@Boolean(label="Compute Overlap") is_compute | |
| //@String(label="Macro Mode",choices={"Fuse and display","Write to disk"}) output_type | |
| //@LogService log | |
| import ij.IJ; | |
| import loci.formats.ImageReader; |