Created
July 18, 2025 17:48
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A nextflow config for mbow
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| params { | |
| // Config Params | |
| config_profile_name = 'ARCC - Medicine Bow' | |
| config_profile_description = 'Advanced Research Computing Center (ARCC) for the University of Wyoming' | |
| config_profile_contact = 'Robert A. Petit III (@rpetit3)' | |
| config_profile_url = 'http://www.uwyo.edu/arcc/' | |
| // Default Resources | |
| max_memory = 64.GB | |
| max_cpus = 16 | |
| max_time = 1.h | |
| } | |
| process { | |
| resourceLimits = [ | |
| memory: 64.GB, | |
| cpus: 16, | |
| time: 1.h | |
| ] | |
| executor = 'slurm' | |
| scratch = false | |
| time = params.max_time | |
| } | |
| apptainer { | |
| enabled = true | |
| autoMounts = true | |
| cacheDir = "/home/rpetit/gscratch/singularity-cache" | |
| } | |
| profiles { | |
| mbow { | |
| params { | |
| config_profile_name = 'ARCC - Medicine Bow - Normal' | |
| config_profile_description = 'Advanced Research Computing Center (ARCC) for the University of Wyoming' | |
| config_profile_contact = 'Robert A. Petit III (@rpetit3)' | |
| config_profile_url = 'http://www.uwyo.edu/arcc/' | |
| max_memory = 256.GB | |
| max_cpus = 48 | |
| } | |
| process { | |
| resourceLimits = [ | |
| memory: 256.GB, | |
| cpus: 48, | |
| time: 72.h | |
| ] | |
| clusterOptions = "--account=${System.getenv('SBATCH_ACCOUNT')} --qos=normal" | |
| } | |
| } | |
| mbow_fast { | |
| params { | |
| config_profile_name = 'ARCC - Medicine Bow - Fast' | |
| config_profile_description = 'Advanced Research Computing Center (ARCC) for the University of Wyoming' | |
| config_profile_contact = 'Robert A. Petit III (@rpetit3)' | |
| config_profile_url = 'http://www.uwyo.edu/arcc/' | |
| max_memory = 256.GB | |
| max_cpus = 48 | |
| } | |
| process { | |
| resourceLimits = [ | |
| memory: 256.GB, | |
| cpus: 48, | |
| time: 12.h | |
| ] | |
| clusterOptions = "--account=${System.getenv('SBATCH_ACCOUNT')} --qos=fast" | |
| } | |
| } | |
| mbow_long { | |
| params { | |
| config_profile_name = 'ARCC - Medicine Bow - Long' | |
| config_profile_description = 'Advanced Research Computing Center (ARCC) for the University of Wyoming' | |
| config_profile_contact = 'Robert A. Petit III (@rpetit3)' | |
| config_profile_url = 'http://www.uwyo.edu/arcc/' | |
| max_memory = 256.GB | |
| max_cpus = 48 | |
| } | |
| process { | |
| resourceLimits = [ | |
| memory: 256.GB, | |
| cpus: 48, | |
| time: 168.h | |
| ] | |
| clusterOptions = "--account=${System.getenv('SBATCH_ACCOUNT')} --qos=long" | |
| } | |
| } | |
| } |
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