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rpetit3/saureus-report.tsv

Created January 24, 2025 18:51
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A Bactopia report for playing with the command-line
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saureus-report.tsv
sample rank reason genome_size species runtype original_runtype mlst_scheme mlst_st assembler_total_contig assembler_total_contig_length assembler_max_contig_length assembler_mean_contig_length assembler_median_contig_length assembler_min_contig_length assembler_n50_contig_length assembler_l50_contig_count assembler_num_contig_non_acgtn assembler_contig_percent_a assembler_contig_percent_c assembler_contig_percent_g assembler_contig_percent_t assembler_contig_percent_n assembler_contig_non_acgtn assembler_contigs_greater_1m assembler_contigs_greater_100k assembler_contigs_greater_10k assembler_contigs_greater_1k assembler_percent_contigs_greater_1m assembler_percent_contigs_greater_100k assembler_percent_contigs_greater_10k assembler_percent_contigs_greater_1k is_paired is_compressed annotator_total_CDS annotator_total_rRNA annotator_total_tRNA qc_original_total_bp qc_original_coverage qc_original_read_total qc_original_read_min qc_original_read_mean qc_original_read_std qc_original_read_median qc_original_read_max qc_original_read_25th qc_original_read_75th qc_original_qual_min qc_original_qual_mean qc_original_qual_std qc_original_qual_max qc_original_qual_median qc_original_qual_25th qc_original_qual_75th qc_final_is_paired qc_final_total_bp qc_final_coverage qc_final_read_total qc_final_read_min qc_final_read_mean qc_final_read_std qc_final_read_median qc_final_read_max qc_final_read_25th qc_final_read_75th qc_final_qual_min qc_final_qual_mean qc_final_qual_std qc_final_qual_max qc_final_qual_median qc_final_qual_25th qc_final_qual_75th
Staph-L82 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 20 2683251 701251 134162 66108 899 695933 2 0 33.26 16.59 16.16 33.99 0.00 0.00 0 7 16 19 0.00 35.00 80.00 95.00 true true 2451 5 58 467473572 166.95479999999998 1782388 35 262.2735 54.5108 298 301 234 301 14 32.3079 2.1425 34 33 32.5000 33 True 280000291 100.0001 1067584 31 262.2745 54.4398 298 301 234 301 15 32.3171 2.1134 34 33 32.5000 33
Staph-C64 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 36 2670126 530403 74170 34285 802 169551 5 0 34.55 15.23 17.55 32.68 0.00 0.00 0 9 25 35 0.00 25.00 69.44 97.22 true true 2452 6 58 348918656 124.6138 1248218 35 279.5330 51.0207 301 301 299 301 2 32.1046 2.3089 34 33 32.5000 33 True 279999827 99.9999 1001680 31 279.5300 50.9352 301 301 299 301 15 32.1172 2.2744 34 33 32.5000 33
Staph-J28 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 17 2690212 653045 158247 71800 523 328656 3 0 33.45 16.50 16.25 33.80 0.00 0.00 0 7 12 16 0.00 41.18 70.59 94.12 true true 2478 3 59 296742582 105.9795 1041744 35 284.8520 43.2106 301 301 300 301 14.5000 31.8875 2.5181 34 32.5000 32 33 True 279999633 99.9998 983220 31 284.7780 43.2817 301 301 300 301 15 31.9022 2.4828 34 32.5000 32 33
Staph-L12 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 18 2840616 894771 157812 54305 854 326173 3 0 34.81 15.29 17.34 32.57 0.00 0.00 0 7 13 16 0.00 38.89 72.22 88.89 true true 2652 4 58 433079919 154.6714 1603584 35 270.0700 49.9350 300 301 252 301 14.5000 32.2846 2.1588 34 33 32.5000 33 True 279999709 99.9999 1036728 31 270.0800 49.8852 300 301 252 301 15 32.2901 2.1425 34 33 32.5000 33
Staph-C85 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 35 2667765 302508 76221 36328 802 169551 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 11 24 34 0.00 31.43 68.57 97.14 true true 2449 6 58 578227228 206.51 2065884 35 279.8930 49.3117 301 301 298 301 2 32.1701 2.2815 34 33 32.5000 33 True 279999879 100.0 1000578 31 279.8380 49.2814 301 301 298 301 15 32.1843 2.2453 34 33 32.5000 33
Staph-C101 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 106 9 2716415 1124865 301823 183578 1275 633343 2 0 33.88 15.71 16.98 33.42 0.00 0.00 1 6 7 9 11.11 66.67 77.78 100.00 true true 2497 5 57 925885809 330.673 3264724 35 283.6030 43.5481 301 301 299 301 2 32.1471 2.2675 34 33 32.5000 33 True 280000022 100.0 987368 31 283.5825 43.5477 301 301 299 301 15 32.1595 2.2319 34 33 32.5000 33
Staph-C52 silver Low coverage (92.63x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 582 20 2736902 678370 136845 43411 521 387454 3 0 33.50 16.50 16.18 33.82 0.00 0.00 0 6 12 18 0.00 30.00 60.00 90.00 true true 2515 7 59 259684164 92.74430000000001 916938 35 283.2075 48.4180 301 301 300 301 14.5000 32.0515 2.3905 34 33 32.5000 33 True 259356069 92.62719999999999 915944 31 283.1570 48.4299 301 301 300 301 15.5000 32.0663 2.3561 34 33 32.5000 33
Staph-L31 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 19 2796110 894962 147163 39273 727 404382 3 0 35.04 14.87 17.76 32.33 0.00 0.00 0 6 12 16 0.00 31.58 63.16 84.21 true true 2584 4 56 561416286 200.506 2071722 35 270.9900 50.1016 300 301 255 301 14 32.2404 2.1705 34 33 32.5000 33 True 280000035 100.0 1033124 31 271.0225 50.0213 300 301 255 301 15 32.2486 2.1492 34 33 32.5000 33
Staph-C89 silver Low coverage (82.59x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 106 7 2717042 1027431 388148 183609 2949 971748 2 0 33.51 16.30 16.40 33.79 0.00 0.00 1 5 6 7 14.29 71.43 85.71 100.00 true true 2498 4 57 231478707 82.67099999999999 830428 35 278.7460 47.2584 301 301 285 301 14.5000 32.2314 2.1655 34 33 32.5000 33 True 231254714 82.59100000000001 829754 31 278.7030 47.2454 301 301 285 301 15 32.2414 2.1352 34 33 32.5000 33
Staph-C63 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 1 8 2715526 1364006 339440 73889 674 1364006 1 0 33.56 16.57 16.13 33.74 0.00 0.00 2 4 5 7 25.00 50.00 62.50 87.50 true true 2479 6 58 456229773 162.9392 1629440 35 279.9920 46.1495 301 301 289 301 13.5000 32.2195 2.1718 34 33 32.5000 33 True 279999482 99.9998 1000428 31 279.8795 46.2467 301 301 289 301 15 32.2315 2.1379 34 33 32.5000 33
Staph-J13 silver Low coverage (96.93x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 30 51 2822771 393331 55348 24698 550 141880 7 0 34.69 15.22 17.53 32.56 0.00 0.00 0 10 30 44 0.00 19.61 58.82 86.27 true true 2682 7 57 271651099 97.0183 974644 35 278.7185 47.1763 301 301 285 301 2 32.2214 2.2086 34 33 32.5000 33 True 271391299 96.9255 973776 31 278.7000 47.1159 301 301 284.5000 301 15 32.2319 2.1792 34 33 32.5000 33
Staph-J90 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 398 13 2673744 566434 205672 153560 1355 469731 3 0 34.61 15.30 17.52 32.58 0.00 0.00 0 8 11 13 0.00 61.54 84.62 100.00 true true 2449 5 58 282661716 100.95060000000001 996344 35 283.6990 49.1772 301 301 300 301 2 32.0666 2.3864 34 33 32.5000 33 True 280000110 100.0001 987020 31 283.6825 49.1234 301 301 300 301 15 32.0824 2.3498 34 33 32.5000 33
Staph-C38 silver Low coverage (83.65x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 34 2668881 302862 78496 39985 803 174688 6 0 34.61 15.18 17.59 32.62 0.00 0.00 0 11 23 33 0.00 32.35 67.65 97.06 true true 2452 5 58 234417845 83.7207 824818 35 284.2055 44.0538 301 301 299 301 14 32.1882 2.2050 34 33 32.5000 33 True 234229054 83.6533 824218 31 284.1835 44.0228 301 301 299 301 15 32.1977 2.1805 34 33 32.5000 33
Staph-J82 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 18 2641878 609452 146771 55688 641 432879 3 0 33.70 15.98 16.74 33.58 0.00 0.00 0 6 13 16 0.00 33.33 72.22 88.89 true true 2404 4 59 459142825 163.9796 1619630 35 283.4860 44.6726 301 301 299 301 2 32.1901 2.2450 34 33 32.5000 33 True 279999729 99.9999 987970 31 283.4090 44.6940 301 301 299 301 15 32.2013 2.2190 34 33 32.5000 33
Staph-C18 silver Low coverage (95.73x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 582 16 2701181 656194 168823 61575 642 436079 3 0 33.52 16.47 16.26 33.75 0.00 0.00 0 5 13 14 0.00 31.25 81.25 87.50 true true 2475 4 59 268247429 95.8027 948724 35 282.7455 45.0955 301 301 299 301 14 32.2383 2.1923 34 33 32.5000 33 True 268042553 95.7295 948168 31 282.6955 45.1237 301 301 299 301 15 32.2470 2.1677 34 33 32.5000 33
Staph-C67 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8313 19 2682133 712989 141164 72293 739 694803 2 0 33.54 16.34 16.39 33.72 0.00 0.00 0 4 14 18 0.00 21.05 73.68 94.74 true true 2456 6 60 584725738 208.83100000000002 2078920 35 281.2640 44.9382 301 301 295 301 14 32.1980 2.1938 34 33 32.5000 33 True 279999682 99.9999 995270 31 281.3305 44.8340 301 301 295 301 15.5000 32.2081 2.1637 34 33 32.5000 33
Staph-C83 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 19 2726802 437268 143515 83730 523 315031 4 0 33.44 16.35 16.33 33.88 0.00 0.00 0 8 15 17 0.00 42.11 78.95 89.47 true true 2514 4 59 292340738 104.4074 1066058 35 274.2260 57.0478 301 301 286 301 2 32.2263 2.1310 34 33 32.5000 33 True 279999680 99.9998 1021022 31 274.2350 56.9314 301 301 285.5000 301 15 32.2380 2.1037 34 33 32.5000 33
Staph-L119 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 17 2671328 611576 157136 83731 1062 318777 4 0 33.25 16.73 15.95 34.07 0.00 0.00 0 8 14 17 0.00 47.06 82.35 100.00 true true 2435 5 59 461164137 164.7015 1669456 35 276.2365 50.5239 301 301 278 301 2 32.1749 2.2938 34 33 32.5000 33 True 279999876 100.0 1013796 31 276.1900 50.5424 301 301 278 301 15 32.1854 2.2657 34 33 32.5000 33
Staph-L78 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 27 2732657 375831 101209 40193 518 255039 5 0 33.79 16.30 16.45 33.46 0.00 0.00 0 9 17 21 0.00 33.33 62.96 77.78 true true 2545 5 58 644688150 230.246 2874790 35 224.2560 64.6682 228 301 176 294 14 32.5491 1.9218 34 33 33 33 True 280000248 100.0001 1249124 31 224.1575 64.6280 228 301 176 293.5000 15 32.5568 1.9011 34 33 33 33
Staph-C69 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 31 2741573 639875 88437 24296 531 326437 3 0 34.29 15.66 17.10 32.94 0.00 0.00 0 7 18 27 0.00 22.58 58.06 87.10 true true 2528 7 60 627540606 224.122 2210678 35 283.8680 41.6808 301 301 299 301 14 32.2024 2.2382 34 33 32.5000 33 True 280000173 100.0001 986590 31 283.8065 41.7066 301 301 299 301 15 32.2136 2.2098 34 33 32.5000 33
Staph-C20 silver Low coverage (80.25x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 59 35 2791097 364965 79745 39053 702 155609 6 0 33.10 16.72 16.07 34.11 0.00 0.00 0 10 30 34 0.00 28.57 85.71 97.14 true true 2586 6 58 224917537 80.3277 805254 35 279.3125 49.1141 301 301 295 301 14 32.2537 2.1919 34 33 32.5000 33 True 224704598 80.2516 804614 31 279.2705 49.1050 301 301 294.5000 301 15 32.2640 2.1638 34 33 32.5000 33
Staph-L116 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 30 38 2881279 298671 75823 54361 534 141877 7 0 34.18 15.69 17.01 33.13 0.00 0.00 0 12 29 35 0.00 31.58 76.32 92.11 true true 2728 7 57 303082710 108.2438 1087024 35 278.8185 46.5430 301 301 283 301 13.5000 32.2664 2.1224 34 33 32.5000 33 True 280000243 100.0001 1004350 31 278.7875 46.5172 301 301 283 301 15 32.2757 2.0954 34 33 32.5000 33
Staph-C74 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end mcaseolyticus - 43 2165106 395502 50351 14956 540 191633 4 0 31.98 17.87 18.69 31.46 0.00 0.00 0 7 29 38 0.00 16.28 67.44 88.37 true true 2214 8 55 380490273 135.8894 1360518 35 279.6655 51.6647 301 301 299 301 2 32.0872 2.3248 34 33 32.5000 33 True 280000172 100.0001 1001338 31 279.6260 51.5988 301 301 299 301 15 32.1007 2.2927 34 33 32.5000 33
Staph-C39 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 33 2668901 302224 80875 43853 802 169551 6 0 34.54 15.21 17.57 32.69 0.00 0.00 0 11 24 32 0.00 33.33 72.73 96.97 true true 2451 4 58 329547979 117.6957 1204980 35 273.4880 49.5611 300 301 263 301 2 32.3037 2.1385 34 33 32.5000 33 True 279999656 99.9999 1024010 31 273.4340 49.5687 300 301 263 301 15 32.3115 2.1139 34 33 32.5000 33
Staph-C66 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 36 2668046 302565 74112 35918 802 169551 6 0 34.53 15.21 17.56 32.69 0.00 0.00 0 11 25 35 0.00 30.56 69.44 97.22 true true 2448 6 58 511541767 182.6934 1810812 35 282.4930 46.6375 301 301 299 301 2 32.0689 2.3358 34 33 32.5000 33 True 280000353 100.0002 991012 31 282.5400 46.5003 301 301 299 301 15 32.0776 2.3116 34 33 32.5000 33
Staph-C49 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 36 2668709 530446 74130 39433 802 154408 5 0 34.67 15.08 17.69 32.56 0.00 0.00 0 10 25 35 0.00 27.78 69.44 97.22 true true 2452 6 58 377233573 134.72629999999998 1337482 35 282.0475 45.8941 301 301 299 301 14 32.1718 2.2199 34 33 32.5000 33 True 280000011 100.0 992636 31 282.0770 45.8105 301 301 299 301 15 32.1818 2.1911 34 33 32.5000 33
Staph-L120 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 26 2917529 881977 112212 28628 771 346035 3 0 34.90 15.28 17.36 32.46 0.00 0.00 0 8 18 24 0.00 30.77 69.23 92.31 true true 2748 6 59 615383239 219.78 2194618 35 280.4055 45.4878 301 301 290 301 2 32.1985 2.2372 34 33 32.5000 33 True 279999903 100.0 998240 31 280.4935 45.3163 301 301 290.5000 301 15.5000 32.2082 2.2097 34 33 32.5000 33
Staph-C32 exclude Low coverage (13.30x, expect >= 20x);Too many contigs (589, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus 398 589 2536664 37898 4306 2910 511 6615 114 0 34.50 15.94 16.79 32.78 0.00 0.00 0 0 51 493 0.00 0.00 8.66 83.70 true true 2278 4 6 37271213 13.311150000000001 132786 35 280.6865 47.9639 301 301 299 301 14.5000 32.2205 2.2277 34 33 32.5000 33 True 37230700 13.296679999999999 132658 31 280.6515 47.9375 301 301 299 301 15.5000 32.2322 2.1947 34 33 32.5000 33
Staph-C55 silver Low coverage (80.19x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 398 19 2699396 564173 142073 58904 589 410308 3 0 34.87 15.10 17.67 32.35 0.00 0.00 0 8 14 17 0.00 42.11 73.68 89.47 true true 2479 6 58 224767908 80.2743 803868 35 279.6080 46.7170 301 301 289 301 2 32.2041 2.2397 34 33 32.5000 33 True 224543783 80.1942 803158 31 279.5760 46.6822 301 301 288.5000 301 15 32.2150 2.2081 34 33 32.5000 33
Staph-C17 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 33 2916966 897704 88392 21171 661 298214 3 0 34.71 15.39 17.24 32.66 0.00 0.00 0 8 22 30 0.00 24.24 66.67 90.91 true true 2743 5 59 626667813 223.81 2451526 35 255.6235 56.6402 281 301 222 301 14.5000 32.4159 2.0311 34 33 33 33 True 280000072 100.0 1095516 31 255.5875 56.5331 281 301 222 301 15 32.4218 2.0102 34 33 33 33
Staph-C57 silver Low coverage (84.88x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 45 19 2672962 619329 140682 81334 659 407384 3 0 33.23 16.55 16.24 33.98 0.00 0.00 0 9 13 17 0.00 47.37 68.42 89.47 true true 2462 3 57 237920995 84.9718 835342 35 284.8185 44.8121 301 301 300 301 2 32.0859 2.3254 34 33 32.5000 33 True 237667753 84.8814 834568 31 284.7795 44.8114 301 301 300 301 15 32.0982 2.2944 34 33 32.5000 33
Staph-J60 exclude Low coverage (14.46x, expect >= 20x);Too many contigs (597, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus 30 597 2669327 29220 4471 2712 511 7877 109 0 34.60 15.53 17.15 32.72 0.00 0.00 0 0 71 493 0.00 0.00 11.89 82.58 true true 2433 3 5 40549536 14.48198 145108 35 279.4440 50.3407 301 301 299 301 14 32.0582 2.3719 34 33 32.5000 33 True 40492313 14.46154 144926 31 279.4000 50.3178 301 301 299 301 15.5000 32.0729 2.3358 34 33 32.5000 33
Staph-C27 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 16 2679679 611527 167479 99611 915 318964 3 0 33.74 16.25 16.51 33.50 0.00 0.00 0 8 14 15 0.00 50.00 87.50 93.75 true true 2455 5 59 430007289 153.574 1561868 35 275.3160 49.8408 301 301 272 301 2 32.2119 2.2270 34 33 32.5000 33 True 280000252 100.0001 1017052 31 275.3055 49.7182 301 301 272 301 15.5000 32.2224 2.2013 34 33 32.5000 33
Staph-C91 bronze Low coverage (34.96x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 50 2662289 302224 53245 30319 800 108910 8 0 34.35 15.56 17.21 32.89 0.00 0.00 0 10 36 48 0.00 20.00 72.00 96.00 true true 2443 5 58 97972761 34.990300000000005 361528 35 270.9965 59.1758 301 301 273 301 14 32.2717 2.1895 34 33 32.5000 33 True 97884040 34.958600000000004 361196 31 271.0000 59.0866 301 301 273 301 15.5000 32.2828 2.1627 34 33 32.5000 33
Staph-C21 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 20 2746323 569815 137316 56735 791 314973 3 0 33.51 16.45 16.29 33.75 0.00 0.00 0 7 16 18 0.00 35.00 80.00 90.00 true true 2563 5 59 309275480 110.4555 1090870 35 283.5125 43.6515 301 301 299 301 14 32.1240 2.3158 34 33 32.5000 33 True 279999730 99.9999 987766 31 283.4675 43.6444 301 301 299 301 15 32.1363 2.2839 34 33 32.5000 33
Staph-C46 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 37 2668128 302555 72111 35856 526 169551 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 11 25 35 0.00 29.73 67.57 94.59 true true 2449 6 58 592397603 211.571 2114192 35 280.2005 44.2677 301 301 285.5000 301 2 32.0042 2.4295 34 33 32.5000 33 True 280000293 100.0001 999294 31 280.1980 44.2480 301 301 285.5000 301 15 32.0166 2.3987 34 33 32.5000 33
Staph-L10 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus - 20 2765182 1296550 138259 30308 720 558559 2 0 33.59 16.57 16.07 33.77 0.00 0.00 1 5 11 18 5.00 25.00 55.00 90.00 true true 2548 5 59 529881609 189.2434 2005750 35 264.1815 52.9616 299 301 238 301 14 32.3593 2.1143 34 33 32.5000 33 True 279999471 99.9998 1060388 31 264.0540 53.0023 299 301 238 301 15 32.3679 2.0887 34 33 32.5000 33
Staph-C47 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 35 2668137 302565 76232 35980 803 175071 6 0 34.61 15.18 17.59 32.62 0.00 0.00 0 11 24 34 0.00 31.43 68.57 97.14 true true 2448 6 58 333899892 119.25 1171944 35 284.9115 41.1525 301 301 299 301 14 32.1387 2.2767 34 33 32.5000 33 True 279999848 99.9999 982846 31 284.8870 41.1713 301 301 299 301 15 32.1470 2.2529 34 33 32.5000 33
Staph-C35 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 30 47 2855039 337207 60745 25545 722 150298 7 0 33.79 15.80 16.97 33.44 0.00 0.00 0 11 32 44 0.00 23.40 68.09 93.62 true true 2706 6 57 310990361 111.06790000000001 1086542 35 286.2205 41.8305 301 301 300 301 14.5000 32.0842 2.3521 34 33 32.5000 33 True 279999892 99.9999 978314 31 286.2065 41.8105 301 301 300 301 15 32.0943 2.3245 34 33 32.5000 33
Staph-C76 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 21 2803735 867742 133511 39268 854 378499 3 0 35.14 14.84 17.78 32.25 0.00 0.00 0 8 14 19 0.00 38.10 66.67 90.48 true true 2591 5 61 394220267 140.793 1426766 35 276.3030 56.9726 301 301 299 301 14 32.0479 2.3914 34 33 32.5000 33 True 279999890 99.9999 1013270 31 276.3330 56.8276 301 301 299 301 15 32.0612 2.3631 34 33 32.5000 33
Staph-C19 bronze Low coverage (30.89x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 5 79 2883539 229957 36500 12941 554 104061 9 0 34.55 15.54 17.17 32.75 0.00 0.00 0 9 42 74 0.00 11.39 53.16 93.67 true true 2712 4 47 86561664 30.9148 312138 35 277.3185 50.0385 301 301 284 301 14.5000 32.2295 2.1742 34 33 32.5000 33 True 86485812 30.8877 311888 31 277.2980 49.9863 301 301 284 301 15.5000 32.2394 2.1463 34 33 32.5000 33
Staph-C86 silver Low coverage (87.79x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 35 2668059 302224 76230 35980 802 175573 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 11 24 34 0.00 31.43 68.57 97.14 true true 2449 5 58 246179412 87.9212 882744 35 278.8795 50.2644 301 301 296 301 14.5000 32.1634 2.3272 34 33 32.5000 33 True 245813823 87.7906 881548 31 278.8435 50.2413 301 301 295.5000 301 15 32.1782 2.2877 34 33 32.5000 33
Staph-C2 exclude Low coverage (12.17x, expect >= 20x);Too many contigs (576, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus - 576 2543988 25992 4416 3021 511 7071 116 0 34.42 15.84 16.81 32.93 0.00 0.00 0 0 53 494 0.00 0.00 9.20 85.76 true true 2318 3 7 34104042 12.180019999999999 124150 35 274.7000 59.4378 301 301 299 301 15 32.1945 2.2326 34 33 32.5000 33 True 34071030 12.16822 123994 31 274.7795 59.2122 301 301 299 301 15.5000 32.2083 2.2064 34 33 32.5000 33
Staph-L65 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 97 15 2706188 787413 180412 104826 1129 429837 3 0 33.92 15.99 16.73 33.36 0.00 0.00 0 8 11 15 0.00 53.33 73.33 100.00 true true 2516 5 58 497800324 177.7859 1780932 35 279.5165 46.1894 301 301 286 301 14 32.1597 2.2721 34 33 32.5000 33 True 280000116 100.0 1001778 31 279.5035 46.1343 301 301 286 301 15 32.1673 2.2505 34 33 32.5000 33
Staph-C5 silver Low coverage (58.35x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 15 34 2707967 312951 79646 42148 516 190666 6 0 33.68 16.07 16.63 33.63 0.00 0.00 0 9 26 30 0.00 26.47 76.47 88.24 true true 2493 5 59 163492358 58.3901 619600 35 263.8675 58.0902 299 301 244 301 14.5000 32.3833 1.9972 34 33 32.5000 33 True 163383388 58.351200000000006 619292 31 263.8230 58.0598 299 301 244 301 15 32.3907 1.9781 34 33 32.5000 33
Staph-J79 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 398 18 2673881 566408 148548 77730 513 397650 3 0 34.41 15.45 17.38 32.77 0.00 0.00 0 8 14 16 0.00 44.44 77.78 88.89 true true 2447 6 58 619977120 221.42000000000002 2257752 35 274.5990 48.6539 300 301 266 301 14 32.3195 2.1166 34 33 32.5000 33 True 280000058 100.0 1019826 31 274.5565 48.6452 300 301 266 301 15.5000 32.3255 2.0988 34 33 32.5000 33
Staph-C71 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 35 2668805 302565 76251 35980 802 175071 6 0 34.61 15.18 17.59 32.62 0.00 0.00 0 11 24 34 0.00 31.43 68.57 97.14 true true 2449 6 58 427953602 152.8406 1512482 35 282.9480 46.8064 301 301 299 301 2 32.0969 2.3119 34 33 32.5000 33 True 280000105 100.0 989520 31 282.9655 46.7366 301 301 299 301 15 32.1093 2.2818 34 33 32.5000 33
Staph-L114 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 28 2787555 541336 99555 34010 527 337402 3 0 33.67 16.22 16.56 33.56 0.00 0.00 0 9 17 24 0.00 32.14 60.71 85.71 true true 2604 5 60 313236211 111.87 1124680 35 278.5115 45.5742 301 301 279 301 14.5000 32.3537 2.0437 34 33 32.5000 33 True 279999854 100.0 1005420 31 278.4905 45.5525 301 301 279 301 15 32.3602 2.0235 34 33 32.5000 33
Staph-C90 silver Low coverage (61.82x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 72 21 2730066 759952 130003 39157 731 609691 2 0 33.86 15.88 16.79 33.47 0.00 0.00 0 5 15 19 0.00 23.81 71.43 90.48 true true 2512 5 58 173252999 61.876000000000005 649298 35 266.8315 54.5148 300 301 247 301 14.5000 32.3408 2.0793 34 33 32.5000 33 True 173108380 61.8244 648912 31 266.7670 54.5058 300 301 247 301 15 32.3483 2.0573 34 33 32.5000 33
Staph-J72 silver Low coverage (53.78x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 398 25 2684453 625369 107378 49412 591 410254 3 0 34.77 15.20 17.58 32.44 0.00 0.00 0 8 19 23 0.00 32.00 76.00 92.00 true true 2466 4 59 150760329 53.843 539336 35 279.5295 51.3169 301 301 299 301 2 32.1216 2.3224 34 33 32.5000 33 True 150581924 53.7792 538748 31 279.5035 51.2592 301 301 299 301 15.5000 32.1356 2.2874 34 33 32.5000 33
Staph-C42 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 34 2668896 302932 78496 39985 802 175071 6 0 34.61 15.18 17.59 32.62 0.00 0.00 0 11 23 33 0.00 32.35 67.65 97.06 true true 2450 6 58 423067815 151.0957 1491096 35 283.7295 42.6210 301 301 299 301 13.5000 32.1029 2.3219 34 33 32.5000 33 True 279999517 99.9998 986972 31 283.6955 42.6028 301 301 299 301 15 32.1142 2.2938 34 33 32.5000 33
Staph-L115 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 19 2743735 695151 144407 46225 527 385811 3 0 33.25 16.79 15.96 34.00 0.00 0.00 0 8 12 16 0.00 42.11 63.16 84.21 true true 2543 5 60 524200500 187.2145 1900764 35 275.7840 47.9631 300 301 270 301 2 32.3097 2.1230 34 33 32.5000 33 True 280000207 100.0 1015712 31 275.6690 48.0825 300 301 270 301 15 32.3181 2.1006 34 33 32.5000 33
Staph-J19 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 72 17 2698005 801694 158706 54965 517 706498 2 0 34.72 15.30 17.40 32.58 0.00 0.00 0 4 13 16 0.00 23.53 76.47 94.12 true true 2473 6 58 346604274 123.7872 1256226 35 275.9095 49.9699 301 301 275 301 13.5000 32.1863 2.2576 34 33 32.5000 33 True 280000058 100.0001 1015138 31 275.8245 49.9957 301 301 275 301 15 32.1962 2.2311 34 33 32.5000 33
Staph-C9 bronze Low coverage (32.42x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 97 26 2709921 795505 104227 79540 708 190926 4 0 33.76 16.03 16.67 33.53 0.00 0.00 0 9 20 24 0.00 34.62 76.92 92.31 true true 2519 5 58 90852037 32.4471 322626 35 281.6015 48.8261 301 301 299 301 14 32.2146 2.1957 34 33 32.5000 33 True 90769068 32.417500000000004 322336 31 281.5975 48.7559 301 301 299 301 15.5000 32.2250 2.1660 34 33 32.5000 33
Staph-L103 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 21 2717555 570434 129407 78411 1667 250224 4 0 34.37 15.71 16.99 32.93 0.00 0.00 0 8 16 21 0.00 38.10 76.19 100.00 true true 2500 5 58 392446283 140.1593 1410186 35 278.2940 46.6756 301 301 280 301 14.5000 32.2296 2.2087 34 33 32.5000 33 True 279999653 99.9999 1006396 31 278.2200 46.7002 301 301 280 301 15.5000 32.2357 2.1888 34 33 32.5000 33
Staph-C50 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 18 2741320 639940 152295 51971 523 383753 3 0 33.51 16.45 16.29 33.76 0.00 0.00 0 7 14 17 0.00 38.89 77.78 94.44 true true 2571 3 59 408654006 145.9478 1426068 35 286.5600 39.1908 301 301 300 301 2 32.0745 2.3541 34 33 32.5000 33 True 279999621 99.9998 977268 31 286.5125 39.2234 301 301 300 301 15 32.0864 2.3235 34 33 32.5000 33
Staph-C59 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 18 2782360 894775 154575 52769 652 651439 2 0 35.05 14.92 17.76 32.27 0.00 0.00 0 6 12 16 0.00 33.33 66.67 88.89 true true 2599 5 59 287742769 102.7652 1015620 35 283.3175 44.6486 301 301 299 301 2 32.1491 2.2516 34 33 32.5000 33 True 279999875 99.9999 988386 31 283.2900 44.6392 301 301 299 301 15 32.1588 2.2248 34 33 32.5000 33
Staph-C62 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 34 43 2803900 542950 65206 41204 534 124181 6 0 33.82 16.02 16.67 33.49 0.00 0.00 0 7 31 39 0.00 16.28 72.09 90.70 true true 2645 6 57 445868709 159.2388 1608782 35 277.1470 48.0974 301 301 277.5000 301 2 32.2645 2.1128 34 33 32.5000 33 True 279999850 99.9999 1010342 31 277.1335 48.0721 301 301 277.5000 301 15.5000 32.2730 2.0892 34 33 32.5000 33
Staph-C95 silver Low coverage (83.43x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 33 2668550 530441 80865 36106 855 176815 5 0 34.61 15.20 17.58 32.62 0.00 0.00 0 9 24 32 0.00 27.27 72.73 96.97 true true 2449 5 58 233819297 83.5069 858078 35 272.4915 61.3500 301 301 294 301 2 32.2074 2.2267 34 33 32.5000 33 True 233605003 83.43039999999999 857016 31 272.5795 61.1158 301 301 294 301 15.5000 32.2214 2.1989 34 33 32.5000 33
Staph-L42 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 26 2708648 692544 104178 66999 597 223741 4 0 34.25 15.89 16.82 33.05 0.00 0.00 0 6 19 22 0.00 23.08 73.08 84.62 true true 2480 7 60 445918183 159.2565 1603482 35 278.0935 46.6061 301 301 279 301 14 32.2634 2.1339 34 33 32.5000 33 True 280000085 100.0 1006904 31 278.0800 46.5216 301 301 279 301 15 32.2700 2.1132 34 33 32.5000 33
Staph-L117 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 72 24 2744045 438257 114335 43595 551 271577 5 0 33.90 16.20 16.46 33.44 0.00 0.00 0 10 15 20 0.00 41.67 62.50 83.33 true true 2525 4 58 561776589 200.635 2072710 35 271.0350 51.8879 300 301 257 301 2 32.3485 2.0820 34 33 32.5000 33 True 279999921 100.0 1033090 31 271.0315 51.8533 300 301 257 301 15 32.3546 2.0650 34 33 32.5000 33
Staph-C54 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 35 2667659 302224 76218 35980 803 169551 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 11 25 34 0.00 31.43 71.43 97.14 true true 2448 5 58 445439632 159.0856 1575226 35 282.7780 43.7407 301 301 299 301 2 32.1473 2.2690 34 33 32.5000 33 True 279999609 99.9998 990334 31 282.7325 43.7592 301 301 298.5000 301 15 32.1593 2.2393 34 33 32.5000 33
Staph-L8 silver Low coverage (60.44x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 5 30 2730383 350795 91012 37553 634 243545 5 0 34.03 16.08 16.66 33.23 0.00 0.00 0 9 20 28 0.00 30.00 66.67 93.33 true true 2543 3 54 169409176 60.503299999999996 722138 35 234.5935 61.5155 242 301 190 300 2 32.4952 1.9854 34 33 33 33 True 169241890 60.4435 721726 31 234.4965 61.4595 242 301 190 300 15 32.5031 1.9601 34 33 33 33
Staph-C10 bronze Low coverage (40.61x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 40 2665897 302224 66647 36049 802 153595 6 0 34.63 15.13 17.63 32.61 0.00 0.00 0 11 30 39 0.00 27.50 75.00 97.50 true true 2448 5 58 113815393 40.648399999999995 400522 35 284.1675 45.8953 301 301 300 301 14.5000 32.1440 2.2640 34 33 32.5000 33 True 113710692 40.611000000000004 400182 31 284.1470 45.8674 301 301 300 301 15 32.1541 2.2363 34 33 32.5000 33
Staph-C80 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 42 2697536 254433 64227 35657 802 144761 7 0 33.93 15.87 16.89 33.31 0.00 0.00 0 11 28 41 0.00 26.19 66.67 97.62 true true 2470 5 56 1261291647 450.461 4849392 35 260.0925 55.7951 293 301 231 301 2 32.3477 2.1428 34 33 32.5000 33 True 279999947 100.0 1076648 31 260.0665 55.6968 292.5000 301 231 301 15 32.3539 2.1229 34 33 32.5000 33
Staph-C44 bronze Low coverage (48.63x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 97 27 2734801 488522 101288 70389 580 225976 5 0 34.48 15.24 17.45 32.83 0.00 0.00 0 12 20 23 0.00 44.44 74.07 85.19 true true 2549 3 58 136292738 48.676 488092 35 279.2355 48.7433 301 301 293 301 2 32.1652 2.2457 34 33 32.5000 33 True 136156126 48.6271 487644 31 279.2125 48.6937 301 301 292.5000 301 15 32.1766 2.2145 34 33 32.5000 33
Staph-L110 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 32 2678177 303826 83693 41497 985 169728 6 0 33.97 15.84 16.92 33.26 0.00 0.00 0 11 25 31 0.00 34.38 78.12 96.88 true true 2450 6 56 311081393 111.1005 1130882 35 275.0785 51.2572 301 301 274 301 14 32.2338 2.2178 34 33 32.5000 33 True 279999786 99.9999 1017948 31 275.0630 51.1710 301 301 274 301 15 32.2460 2.1829 34 33 32.5000 33
Staph-C45 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 188 11 2713139 877168 246649 108220 523 535771 2 0 33.17 16.64 16.04 34.15 0.00 0.00 0 6 8 9 0.00 54.55 72.73 81.82 true true 2525 4 58 462894845 165.3196 1635010 35 283.1145 42.9191 301 301 299 301 14.5000 32.2490 2.2023 34 33 32.5000 33 True 279999677 99.9999 988982 31 283.1190 42.8955 301 301 298.5000 301 15 32.2567 2.1783 34 33 32.5000 33
Staph-C84 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 38 2668687 530400 70228 29793 802 169551 5 0 34.58 15.19 17.59 32.65 0.00 0.00 0 9 27 37 0.00 23.68 71.05 97.37 true true 2450 5 58 637669236 227.73899999999998 2271768 35 280.6925 47.2955 301 301 297 301 2 32.2164 2.2385 34 33 32.5000 33 True 280000016 100.0 997882 31 280.5945 47.3732 301 301 297 301 15 32.2250 2.2130 34 33 32.5000 33
Staph-L113 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 45 17 2735516 749591 160912 39124 545 419776 3 0 32.37 17.52 15.24 34.86 0.00 0.00 0 7 11 14 0.00 41.18 64.71 82.35 true true 2547 6 58 407316070 145.47000000000003 1475970 35 275.9650 46.9924 300 301 270 301 2 32.2649 2.1755 34 33 32.5000 33 True 279999890 100.0 1016112 31 275.5600 47.2989 300 301 268.5000 301 15 32.2908 2.1215 34 33 32.5000 33
Staph-C53 silver Low coverage (75.25x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 6176 21 2681617 562283 127696 67691 694 410084 3 0 35.03 14.89 17.92 32.15 0.00 0.00 0 8 15 19 0.00 38.10 71.43 90.48 true true 2457 7 58 210980329 75.3501 762744 35 276.6070 56.4514 301 301 299 301 14.5000 32.0981 2.3542 34 33 32.5000 33 True 210709653 75.2535 761830 31 276.5835 56.3988 301 301 299 301 15.5000 32.1130 2.3195 34 33 32.5000 33
Staph-C37 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus - 30 2797700 653642 93256 37117 770 220096 4 0 34.28 15.52 17.19 33.02 0.00 0.00 0 8 18 29 0.00 26.67 60.00 96.67 true true 2617 5 60 305831478 109.2256 1087896 35 281.1220 50.7473 301 301 299 301 14 31.8748 2.5558 34 32.5000 32 33 True 280000182 100.0 996212 31 281.0645 50.7536 301 301 299 301 15.5000 31.8937 2.5146 34 32.5000 32 33
Staph-L105 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 30 41 2797469 278127 68230 44036 534 150150 8 0 34.24 15.62 17.09 33.05 0.00 0.00 0 11 27 39 0.00 26.83 65.85 95.12 true true 2631 6 57 288638353 103.0852 1044628 35 276.3075 48.6374 301 301 274.5000 301 2 32.1785 2.1628 34 33 32.5000 33 True 279999627 99.9998 1013458 31 276.2815 48.5957 301 301 274 301 15.5000 32.1873 2.1384 34 33 32.5000 33
Staph-J16 silver Low coverage (85.78x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus - 10 2762469 1354117 276246 83498 747 665058 2 0 33.76 16.24 16.47 33.53 0.00 0.00 1 5 8 9 10.00 50.00 80.00 90.00 true true 2568 4 58 240356700 85.8417 855112 35 281.0820 43.1544 301 301 288 301 14.5000 32.2711 2.1676 34 33 32.5000 33 True 240171530 85.7755 854572 31 281.0430 43.1598 301 301 288 301 15 32.2791 2.1439 34 33 32.5000 33
Staph-J88 silver Low coverage (57.57x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 398 22 2684989 723808 122044 44250 568 410254 3 0 34.79 15.10 17.68 32.43 0.00 0.00 0 7 16 21 0.00 31.82 72.73 95.45 true true 2468 5 59 161408449 57.6459 565270 35 285.5425 46.1294 301 301 300 301 14 31.9603 2.4711 34 33 32.5000 33 True 161191846 57.5685 564562 31 285.5165 46.1084 301 301 300 301 15.5000 31.9759 2.4350 34 33 32.5000 33
Staph-C70 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 45 22 2673396 423087 121518 73206 557 317027 4 0 33.00 16.79 16.00 34.21 0.00 0.00 0 9 15 19 0.00 40.91 68.18 86.36 true true 2462 3 57 994371967 355.133 3970286 35 250.4535 59.0236 272 301 214 301 13.5000 32.2749 2.2091 34 33 32.5000 33 True 279999895 100.0 1118704 31 250.2895 59.0353 271 301 213.5000 301 15 32.2844 2.1841 34 33 32.5000 33
Staph-C94 exclude Low coverage (14.01x, expect >= 20x);Too many contigs (1352, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end - - 1352 2868171 19426 2121 1284 511 3331 258 0 33.11 17.34 18.57 30.98 0.00 0.00 0 0 14 813 0.00 0.00 1.04 60.13 true true 2692 3 4 39281395 14.02907 141958 35 276.7115 53.5911 301 301 294 301 14 32.2144 2.2296 34 33 32.5000 33 True 39230666 14.01096 141820 31 276.6225 53.6432 301 301 294 301 15.5000 32.2295 2.1902 34 33 32.5000 33
Staph-C79 silver Low coverage (51.92x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 40 2666916 302224 66672 35909 802 150958 7 0 34.56 15.28 17.49 32.66 0.00 0.00 0 10 29 39 0.00 25.00 72.50 97.50 true true 2446 5 58 145503996 51.9657 520894 35 279.3355 50.6058 301 301 298.5000 301 14 32.1723 2.2109 34 33 32.5000 33 True 145379364 51.9212 520456 31 279.3305 50.5332 301 301 298 301 15.5000 32.1822 2.1852 34 33 32.5000 33
Staph-C92 bronze Low coverage (27.40x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 72 42 2725987 298756 64904 35015 523 181239 6 0 34.20 15.91 16.75 33.14 0.00 0.00 0 10 33 41 0.00 23.81 78.57 97.62 true true 2501 5 54 76801214 27.429000000000002 280060 35 274.2315 58.7019 301 301 297 301 14.5000 31.9094 2.4415 34 32.5000 32 33 True 76708360 27.3959 279744 31 274.2090 58.6587 301 301 296.5000 301 15.5000 31.9235 2.4116 34 32.5000 32 33
Staph-C12 silver Low coverage (85.32x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 36 2667771 302565 74104 36048 802 169551 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 10 26 35 0.00 27.78 72.22 97.22 true true 2449 5 58 239056671 85.3774 836398 35 285.8170 42.9876 301 301 300 301 14 32.0915 2.2270 34 33 32.5000 33 True 238884125 85.3158 835864 31 285.7930 42.9744 301 301 300 301 15 32.0998 2.2031 34 33 32.5000 33
Staph-C82 silver Low coverage (52.39x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 5 17 2694050 763439 158473 46784 528 695565 2 0 33.20 16.65 16.07 34.09 0.00 0.00 0 6 11 16 0.00 35.29 64.71 94.12 true true 2477 5 58 146885482 52.4591 534090 35 275.0205 54.8895 301 301 285 301 2 32.1811 2.2844 34 33 32.5000 33 True 146694254 52.3908 533454 31 274.9895 54.8295 301 301 285 301 15.5000 32.1944 2.2491 34 33 32.5000 33
Staph-L94 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 20 2683191 701251 134159 65367 703 695760 2 0 33.27 16.58 16.17 33.98 0.00 0.00 0 7 16 19 0.00 35.00 80.00 95.00 true true 2450 4 58 330768688 118.1317 1215368 35 272.1550 51.0648 300 301 261 301 14 32.3499 2.0659 34 33 32.5000 33 True 279999972 100.0 1029020 31 272.1035 51.0478 300 301 260.5000 301 15 32.3583 2.0422 34 33 32.5000 33
Staph-J44 silver Low coverage (63.95x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 398 26 2684350 629906 103244 44634 591 410254 3 0 34.77 15.20 17.59 32.45 0.00 0.00 0 7 20 25 0.00 26.92 76.92 96.15 true true 2461 5 59 179249428 64.0176 666796 35 268.8225 58.4327 300 301 260 301 14.5000 32.3640 2.0451 34 33 32.5000 33 True 179068418 63.953 666074 31 268.8415 58.2918 300 301 259.5000 301 15 32.3764 2.0136 34 33 32.5000 33
Staph-J65 silver Low coverage (59.95x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus - 10 2762195 1354114 276219 83498 747 714411 2 0 33.84 16.15 16.56 33.46 0.00 0.00 1 5 7 8 10.00 50.00 70.00 80.00 true true 2568 3 58 168038786 60.0138 597936 35 281.0310 50.1470 301 301 299 301 14.5000 32.1623 2.2830 34 33 32.5000 33 True 167857921 59.9493 597342 31 281.0080 50.1121 301 301 299 301 15 32.1750 2.2510 34 33 32.5000 33
Staph-C43 bronze Low coverage (23.61x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 97 136 2692234 145233 19795 12615 517 37579 25 0 34.03 16.00 16.64 33.33 0.00 0.00 0 2 74 123 0.00 1.47 54.41 90.44 true true 2507 2 10 66156746 23.6274 241904 35 273.4835 53.0851 301 301 271 301 14.5000 32.3249 2.0956 34 33 32.5000 33 True 66111667 23.6114 241774 31 273.4440 53.0725 301 301 271 301 15.5000 32.3323 2.0732 34 33 32.5000 33
Staph-C61 exclude Low coverage (16.74x, expect >= 20x);Too many contigs (579, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus 30 579 2693052 31271 4651 3068 511 8270 109 0 34.56 15.69 16.99 32.76 0.00 0.00 0 0 72 478 0.00 0.00 12.44 82.56 true true 2453 2 6 46938461 16.76374 172944 35 271.4085 59.9373 301 301 278 301 14 32.2049 2.2753 34 33 32.5000 33 True 46883506 16.74411 172732 31 271.4230 59.8376 301 301 278 301 15.5000 32.2185 2.2436 34 33 32.5000 33
Staph-C41 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 8 19 2914999 894864 153421 39225 854 407479 3 0 34.74 15.34 17.30 32.62 0.00 0.00 0 6 12 18 0.00 31.58 63.16 94.74 true true 2746 5 59 369842950 132.0867 1314084 35 281.4455 45.5026 301 301 297 301 14 32.1224 2.3153 34 33 32.5000 33 True 279999820 100.0 994858 31 281.4470 45.4549 301 301 297 301 15 32.1333 2.2869 34 33 32.5000 33
Staph-C1 bronze Low coverage (35.25x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 8 35 2798182 832485 79948 39224 602 159140 4 0 35.04 15.03 17.59 32.33 0.00 0.00 0 7 28 32 0.00 20.00 80.00 91.43 true true 2579 4 59 98779353 35.2783 361590 35 273.1805 54.1725 301 301 271 301 2 32.2135 2.1507 34 33 32.5000 33 True 98698382 35.2494 361316 31 273.1635 54.1176 301 301 271 301 15 32.2237 2.1229 34 33 32.5000 33
Staph-L112 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 29 2740963 385809 94515 46534 613 211342 5 0 33.48 16.25 16.49 33.78 0.00 0.00 0 9 22 26 0.00 31.03 75.86 89.66 true true 2541 4 58 436698856 155.9639 1800700 35 242.5160 61.1165 257 301 199 301 14 32.4672 1.9860 34 33 33 33 True 280000408 100.0001 1155250 31 242.3720 61.0780 257 301 199 301 15 32.4735 1.9687 34 33 33 33
Staph-C28 exclude Too many contigs (714, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus 8 714 4987106 147888 6984 3485 535 15508 69 0 30.10 20.09 20.48 29.33 0.00 0.00 0 1 91 659 0.00 0.14 12.75 92.30 true true 4709 6 17 129411015 46.2183 456006 35 283.7925 44.2099 301 301 299 301 14.5000 32.1962 2.2305 34 33 32.5000 33 True 129295143 46.1769 455636 31 283.7685 44.1823 301 301 299 301 15.5000 32.2057 2.2047 34 33 32.5000 33
Staph-C4 bronze Low coverage (22.20x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 5 69 2680450 304529 38847 31468 534 72308 11 0 34.28 15.71 17.01 33.00 0.00 0.00 0 6 45 63 0.00 8.70 65.22 91.30 true true 2457 4 48 62222050 22.222099999999998 223236 35 278.7275 52.7830 301 301 299 301 2 32.1588 2.2894 34 33 32.5000 33 True 62163152 22.201099999999997 223032 31 278.7185 52.7203 301 301 299 301 15.5000 32.1702 2.2593 34 33 32.5000 33
Staph-C99 silver Low coverage (95.50x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 15 29 2709585 441661 93433 42267 567 251323 4 0 33.34 16.34 16.36 33.95 0.00 0.00 0 7 22 27 0.00 24.14 75.86 93.10 true true 2495 3 59 267711655 95.6113 963554 35 277.8375 54.1395 301 301 299 301 14.5000 32.1079 2.3517 34 33 32.5000 33 True 267412984 95.50460000000001 962566 31 277.8125 54.0912 301 301 299 301 15 32.1211 2.3217 34 33 32.5000 33
Staph-C7 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 5 34 2714110 447436 79826 12709 614 243935 4 0 33.75 16.05 16.68 33.52 0.00 0.00 0 9 20 29 0.00 26.47 58.82 85.29 true true 2509 2 58 668641723 238.801 2974424 35 224.7970 63.2492 229 301 180 287 13.5000 32.4691 2.0522 34 33 33 33 True 280000007 100.0 1246542 31 224.6215 63.1691 229 301 180 286.5000 15 32.4836 2.0138 34 33 33 33
Staph-C60 silver Low coverage (60.91x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 6 18 2766119 703042 153673 95350 1419 336544 3 0 32.90 16.77 15.96 34.37 0.00 0.00 0 9 14 18 0.00 50.00 77.78 100.00 true true 2551 4 58 170712058 60.9686 606430 35 281.5030 49.3567 301 301 299 301 14 32.2285 2.2220 34 33 32.5000 33 True 170536083 60.9057 605876 31 281.4700 49.3334 301 301 299 301 15 32.2399 2.1932 34 33 32.5000 33
Staph-C36 silver Low coverage (95.38x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 188 11 2728598 885768 248054 108219 523 535006 2 0 32.66 17.23 15.43 34.68 0.00 0.00 0 6 8 9 0.00 54.55 72.73 81.82 true true 2524 5 58 267355593 95.4842 933696 35 286.3410 42.8423 301 301 300 301 14 31.9808 2.4066 34 33 32.5000 33 True 267074103 95.3836 932832 31 286.3050 42.8507 301 301 300 301 15 31.9924 2.3779 34 33 32.5000 33
Staph-C58 silver Low coverage (85.75x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 398 20 2700514 564769 135025 54167 879 410318 3 0 34.88 15.10 17.67 32.35 0.00 0.00 0 8 14 19 0.00 40.00 70.00 95.00 true true 2481 6 58 240463149 85.8797 844974 35 284.5805 44.1480 301 301 300 301 14 31.7942 2.5797 34 32.5000 32 33 True 240100508 85.7502 843834 31 284.5350 44.1363 301 301 300 301 15.5000 31.8102 2.5416 34 32.5000 32 33
Staph-C72 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end - - 52 3145515 363697 60490 24767 606 206666 6 0 26.03 23.99 22.89 27.10 0.00 0.00 0 8 36 45 0.00 15.38 69.23 86.54 true true 3223 7 65 575422176 205.508 2017824 35 285.1700 44.7696 301 301 300 301 2 32.0174 2.3910 34 33 32.5000 33 True 279999972 100.0 981612 31 285.2450 44.5466 301 301 300 301 15 32.0335 2.3513 34 33 32.5000 33
Staph-C25 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 34 2668262 302555 78478 39985 802 169551 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 11 24 33 0.00 32.35 70.59 97.06 true true 2449 4 58 376993818 134.6406 1344994 35 280.2940 46.7726 301 301 294 301 14 32.2233 2.2174 34 33 32.5000 33 True 280000202 100.0001 999014 31 280.2765 46.7535 301 301 293.5000 301 15 32.2319 2.1928 34 33 32.5000 33
Staph-C65 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 72 18 2705343 760565 150296 66511 731 494914 3 0 33.91 15.85 16.86 33.38 0.00 0.00 0 6 14 16 0.00 33.33 77.78 88.89 true true 2476 5 58 416634995 148.7982 1450898 35 287.1565 39.2647 301 301 300 301 14 32.0663 2.3480 34 33 32.5000 33 True 280000102 100.0 975130 31 287.1410 39.2719 301 301 300 301 15 32.0774 2.3151 34 33 32.5000 33
Staph-L121 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 15 16 2671684 611576 166980 77794 530 328599 3 0 33.25 16.72 15.96 34.06 0.00 0.00 0 7 13 15 0.00 43.75 81.25 93.75 true true 2435 4 59 576394828 205.85500000000002 2109992 35 273.1740 49.4184 300 301 262 301 14 32.2696 2.1611 34 33 32.5000 33 True 279999854 99.9999 1025366 31 273.0730 49.4436 300 301 261.5000 301 15 32.2797 2.1328 34 33 32.5000 33
Staph-C34 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 582 12 2711219 1098476 225934 65386 627 566985 2 0 33.54 16.45 16.25 33.76 0.00 0.00 1 5 9 11 8.33 41.67 75.00 91.67 true true 2496 4 59 402190012 143.63920000000002 1406300 35 285.9915 39.0650 301 301 299 301 2 32.1560 2.2881 34 33 32.5000 33 True 279999864 100.0 979192 31 285.9500 39.1310 301 301 299 301 15 32.1648 2.2629 34 33 32.5000 33
Staph-R48 silver Low coverage (69.78x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 30 51 2815930 392817 55214 16123 534 154727 6 0 34.33 15.77 16.98 32.92 0.00 0.00 0 8 32 44 0.00 15.69 62.75 86.27 true true 2658 5 57 195568743 69.846 716818 35 272.8290 49.8581 300 301 261 301 14 32.2640 2.1918 34 33 32.5000 33 True 195380595 69.77879999999999 716258 31 272.7795 49.8441 300 301 261 301 15 32.2740 2.1612 34 33 32.5000 33
Staph-C8 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 33 2667911 302224 80845 43853 802 169551 6 0 34.54 15.21 17.56 32.69 0.00 0.00 0 11 25 32 0.00 33.33 75.76 96.97 true true 2449 4 58 492669337 175.9534 1762440 35 279.5380 45.5747 301 301 285 301 2 32.2441 2.1707 34 33 32.5000 33 True 280000248 100.0001 1001974 31 279.4485 45.6377 301 301 285 301 15 32.2545 2.1440 34 33 32.5000 33
Staph-C14 silver Low coverage (63.34x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end - - 91 2900976 232105 31878 11170 521 72481 12 0 31.75 18.44 18.11 31.71 0.00 0.00 0 6 49 74 0.00 6.59 53.85 81.32 true true 2844 8 63 177624608 63.4373 641256 35 276.9950 51.1185 301 301 285 301 14.5000 32.1859 2.2518 34 33 32.5000 33 True 177365884 63.345 640720 31 276.8230 51.2755 301 301 284.5000 301 15.5000 32.2025 2.2080 34 33 32.5000 33
Staph-C33 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 72 22 2751444 557871 125065 53065 705 432520 3 0 34.17 15.73 16.98 33.12 0.00 0.00 0 5 15 20 0.00 22.73 68.18 90.91 true true 2538 7 58 400642328 143.08659999999998 1424502 35 281.2505 45.5345 301 301 297 301 13.5000 32.2340 2.1877 34 33 32.5000 33 True 280000384 100.0002 995940 31 281.1415 45.6392 301 301 296 301 15 32.2431 2.1633 34 33 32.5000 33
Staph-C31 bronze Low coverage (28.16x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus - 49 2747584 452337 56073 29530 637 146044 6 0 33.83 16.15 16.62 33.39 0.00 0.00 0 8 33 46 0.00 16.33 67.35 93.88 true true 2567 4 52 78905184 28.1805 293484 35 268.8570 53.8894 300 301 253 301 14.5000 32.3101 2.1272 34 33 32.5000 33 True 78840312 28.1573 293306 31 268.7990 53.8837 300 301 253 301 15 32.3179 2.1050 34 33 32.5000 33
Staph-L111 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 582 17 2712283 1097183 159546 47352 518 388342 2 0 33.39 16.56 16.17 33.88 0.00 0.00 1 6 11 12 5.88 35.29 64.71 70.59 true true 2504 5 59 428179484 152.9213 1572716 35 272.2550 48.9354 300 301 258 301 14 32.3143 2.1066 34 33 32.5000 33 True 280000034 100.0 1028716 31 272.1840 48.9044 300 301 257.5000 301 15 32.3250 2.0776 34 33 32.5000 33
Staph-J83 silver Low coverage (78.14x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 30 38 2787512 254473 73355 42116 534 154693 7 0 34.81 15.06 17.67 32.46 0.00 0.00 0 12 29 34 0.00 31.58 76.32 89.47 true true 2627 6 56 219065487 78.2376 774628 35 282.8010 48.5458 301 301 300 301 13.5000 32.0992 2.3550 34 33 32.5000 33 True 218796798 78.1417 773724 31 282.7840 48.5058 301 301 300 301 15.5000 32.1130 2.3205 34 33 32.5000 33
Staph-C22 bronze Low coverage (28.72x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus - 41 2783756 299365 67896 42212 534 116174 8 0 33.88 15.86 16.87 33.39 0.00 0.00 0 11 35 38 0.00 26.83 85.37 92.68 true true 2572 3 53 80487645 28.7456 291200 35 276.4000 52.4400 301 301 285 301 14.5000 32.2065 2.2219 34 33 32.5000 33 True 80421582 28.722 291012 31 276.3515 52.4425 301 301 285 301 15.5000 32.2150 2.2004 34 33 32.5000 33
Staph-L118 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus - 18 2773529 894732 154084 47117 808 651047 2 0 35.14 14.84 17.80 32.22 0.00 0.00 0 7 12 16 0.00 38.89 66.67 88.89 true true 2566 5 61 494458106 176.59210000000002 1750588 35 282.4525 44.7170 301 301 299 301 14.5000 32.2649 2.1471 34 33 32.5000 33 True 279999664 99.9998 991504 31 282.3990 44.7024 301 301 299 301 15.5000 32.2736 2.1223 34 33 32.5000 33
Staph-C68 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 6 14 2722724 852307 194480 127854 948 535699 2 0 33.07 16.76 15.94 34.23 0.00 0.00 0 8 10 13 0.00 57.14 71.43 92.86 true true 2486 5 59 507661718 181.3078 1784540 35 284.4775 44.4790 301 301 300 301 14.5000 32.1172 2.3141 34 33 32.5000 33 True 280000224 100.0001 984544 31 284.3960 44.5423 301 301 300 301 15 32.1331 2.2783 34 33 32.5000 33
Staph-J89 exclude Low coverage (14.96x, expect >= 20x) 2800000 Staphylococcus aureus paired-end paired-end saureus 59 412 2557466 35595 6207 4315 512 10598 78 0 34.25 15.97 16.70 33.08 0.00 0.00 0 0 87 355 0.00 0.00 21.12 86.17 true true 2301 3 5 41929454 14.97481 149750 35 279.9965 51.4960 301 301 299 301 14.5000 32.0320 2.3911 34 33 32.5000 33 True 41880377 14.95728 149584 31 279.9790 51.4438 301 301 299 301 15.5000 32.0448 2.3598 34 33 32.5000 33
Staph-J78 exclude Low coverage (11.39x, expect >= 20x);Too many contigs (1218, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus - 1218 2279443 18386 1871 1406 511 2432 288 0 34.72 15.72 17.00 32.57 0.00 0.00 0 0 4 808 0.00 0.00 0.33 66.34 true true 1959 3 4 31924752 11.4017 126538 35 252.2940 60.8916 279 301 218 301 15 32.4004 2.0666 34 33 32.5000 33 True 31889278 11.38903 126410 31 252.2685 60.7570 279 301 218 301 16 32.4112 2.0377 34 33 32.5000 33
Staph-L74 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 34 2678865 304046 78790 37583 622 169728 6 0 34.13 15.73 17.04 33.10 0.00 0.00 0 11 25 32 0.00 32.35 73.53 94.12 true true 2449 5 57 704919201 251.757 2596044 35 271.5360 49.9436 300 301 257 301 14 32.3236 2.1173 34 33 32.5000 33 True 280000028 100.0 1031446 31 271.4635 49.9367 300 301 256 301 15 32.3329 2.0878 34 33 32.5000 33
Staph-C77 bronze Low coverage (23.13x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 188 75 2767448 231242 36899 26381 548 67771 13 0 34.11 15.74 16.93 33.22 0.00 0.00 0 5 52 67 0.00 6.67 69.33 89.33 true true 2594 2 45 64856514 23.1631 237000 35 273.6560 56.3844 301 301 281 301 2 32.2086 2.2469 34 33 32.5000 33 True 64777900 23.134999999999998 236720 31 273.6480 56.3017 301 301 280.5000 301 15.5000 32.2224 2.2119 34 33 32.5000 33
Staph-C51 silver Low coverage (81.67x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 15 21 2740318 639939 130491 38910 523 382825 3 0 33.50 16.43 16.30 33.77 0.00 0.00 0 7 15 18 0.00 33.33 71.43 85.71 true true 2569 5 59 228956888 81.77029999999999 795352 35 287.8685 39.9451 301 301 300 301 14.5000 32.0431 2.3946 34 33 32.5000 33 True 228683946 81.6728 794526 31 287.8240 39.9663 301 301 300 301 15.5000 32.0562 2.3610 34 33 32.5000 33
Staph-J30 silver Low coverage (91.06x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 8 33 2958201 620982 89642 24009 745 316641 4 0 34.38 15.74 16.93 32.95 0.00 0.00 0 9 21 30 0.00 27.27 63.64 90.91 true true 2812 5 59 255201924 91.14349999999999 937224 35 272.2955 51.9033 300 301 262 301 14 32.3055 2.1608 34 33 32.5000 33 True 254965902 91.0592 936478 31 272.2605 51.8696 300 301 262 301 15 32.3153 2.1326 34 33 32.5000 33
Staph-J81 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 30 47 2823049 393331 60064 24698 518 144975 6 0 34.72 15.16 17.59 32.53 0.00 0.00 0 9 30 42 0.00 19.15 63.83 89.36 true true 2677 6 57 685648347 244.875 2471132 35 277.4630 47.3637 301 301 277 301 2 32.2883 2.1386 34 33 32.5000 33 True 280000110 100.0001 1009208 31 277.4455 47.3269 301 301 277 301 15 32.2974 2.1108 34 33 32.5000 33
Staph-C100 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 106 8 2716777 1355039 339597 146093 1275 633284 2 0 33.88 15.72 16.98 33.42 0.00 0.00 1 5 6 8 12.50 62.50 75.00 100.00 true true 2498 5 57 581562014 207.701 2080892 35 279.4775 49.1350 301 301 297 301 2 32.2670 2.0808 34 33 32.5000 33 True 279999567 99.9998 1001886 31 279.4725 49.0546 301 301 296.5000 301 15 32.2761 2.0542 34 33 32.5000 33
Staph-C24 exclude Low coverage (11.08x, expect >= 20x);Too many contigs (1073, expect <= 500) 2800000 Staphylococcus aureus paired-end paired-end saureus - 1073 2372345 17019 2210 1570 514 2989 234 0 34.74 15.73 16.89 32.63 0.00 0.00 0 0 12 792 0.00 0.00 1.12 73.81 true true 2048 3 3 31051672 11.08988 117344 35 264.6210 59.2362 300 301 245 301 14.5000 32.2790 2.1749 34 33 32.5000 33 True 31028902 11.08175 117276 31 264.5800 59.1761 300 301 245 301 15.5000 32.2870 2.1566 34 33 32.5000 33
Staph-C16 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 30 36 2758056 389800 76612 39546 534 150726 6 0 34.49 15.30 17.42 32.78 0.00 0.00 0 10 26 34 0.00 27.78 72.22 94.44 true true 2568 5 57 478305569 170.8234 1744940 35 274.1100 50.1971 300 301 267 301 14 32.2571 2.1986 34 33 32.5000 33 True 279999741 99.9999 1021560 31 274.0905 50.1535 300 301 267 301 15 32.2654 2.1721 34 33 32.5000 33
Staph-C56 bronze Low coverage (36.36x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 5 20 2694531 669701 134726 54428 1442 343293 3 0 33.80 16.44 16.29 33.47 0.00 0.00 0 7 14 20 0.00 35.00 70.00 100.00 true true 2477 4 54 101925051 36.401799999999994 365526 35 278.8445 52.6600 301 301 299 301 14 32.1614 2.2738 34 33 32.5000 33 True 101797916 36.3564 365110 31 278.8145 52.6198 301 301 299 301 15.5000 32.1750 2.2385 34 33 32.5000 33
Staph-C102 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 36 2668066 302224 74112 36015 802 169551 6 0 34.57 15.19 17.59 32.66 0.00 0.00 0 10 26 35 0.00 27.78 72.22 97.22 true true 2449 6 58 947972107 338.56100000000004 3448448 35 274.8980 48.5781 300 301 268 301 2 32.2276 2.2232 34 33 32.5000 33 True 279999836 99.9999 1018748 31 274.8470 48.5927 300 301 267.5000 301 15 32.2380 2.1943 34 33 32.5000 33
Staph-L88 bronze Low coverage (39.41x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 1181 31 2748749 544701 88669 38652 533 301865 4 0 33.97 16.27 16.39 33.37 0.00 0.00 0 8 20 26 0.00 25.81 64.52 83.87 true true 2524 6 60 110457833 39.449200000000005 408328 35 270.5125 54.9898 300 301 260 301 14.5000 32.3022 2.0860 34 33 32.5000 33 True 110359738 39.4142 407996 31 270.4920 54.9285 300 301 260 301 15.5000 32.3109 2.0612 34 33 32.5000 33
Staph-C15 silver Low coverage (57.56x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 87 39 2666681 302224 68376 36248 802 169551 6 0 34.52 15.27 17.50 32.71 0.00 0.00 0 10 28 38 0.00 25.64 71.79 97.44 true true 2448 5 58 161302113 57.6079 580278 35 277.9740 47.6448 301 301 281 301 14.5000 32.2934 2.1116 34 33 32.5000 33 True 161181117 57.5647 579946 31 277.9245 47.6561 301 301 281 301 15.5000 32.3015 2.0889 34 33 32.5000 33
Staph-C75 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus - 33 2798469 655804 84802 20057 986 220096 4 0 34.18 15.63 17.07 33.12 0.00 0.00 0 8 19 32 0.00 24.24 57.58 96.97 true true 2615 5 60 490529808 175.1893 1732534 35 283.1285 46.8184 301 301 300 301 2 32.1771 2.2484 34 33 32.5000 33 True 280000002 100.0 989138 31 283.0745 46.8631 301 301 299.5000 301 15.5000 32.1883 2.2224 34 33 32.5000 33
Staph-C3 silver Low coverage (53.60x, expect >= 100x) 2800000 Staphylococcus aureus paired-end paired-end saureus 8 16 2746785 895129 171674 46596 808 627324 2 0 35.34 14.60 18.01 32.05 0.00 0.00 0 6 11 14 0.00 37.50 68.75 87.50 true true 2519 4 59 150276287 53.670100000000005 533280 35 281.7965 53.1373 301 301 300 301 14 32.0020 2.4143 34 33 32.5000 33 True 150067397 53.5955 532572 31 281.7785 53.0958 301 301 300 301 15.5000 32.0189 2.3768 34 33 32.5000 33
Staph-C97 bronze Low coverage (23.90x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 20 58 2765964 247183 47689 31188 767 109086 9 0 34.03 16.01 16.63 33.32 0.00 0.00 0 9 44 57 0.00 15.52 75.86 98.28 true true 2574 4 54 67003138 23.929699999999997 245672 35 272.7340 60.5154 301 301 292.5000 301 2 32.1767 2.2584 34 33 32.5000 33 True 66929590 23.903399999999998 245366 31 272.7745 60.3492 301 301 292 301 15 32.1913 2.2261 34 33 32.5000 33
Staph-C6 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 582 24 2740402 438896 114183 49425 527 318459 4 0 34.07 15.62 17.04 33.27 0.00 0.00 0 7 15 22 0.00 29.17 62.50 91.67 true true 2519 4 59 646600312 230.929 2566886 35 251.9010 57.9877 274 301 216 301 14 32.4324 2.0256 34 33 33 33 True 279999982 100.0 1112068 31 251.7830 57.9791 273 301 216 301 15 32.4445 1.9916 34 33 33 33
Staph-J42 bronze Low coverage (27.69x, expect >= 50x) 2800000 Staphylococcus aureus paired-end paired-end saureus 59 63 2658025 162683 42190 35122 523 89970 12 0 34.43 15.57 17.17 32.83 0.00 0.00 0 7 43 54 0.00 11.11 68.25 85.71 true true 2425 3 52 77618705 27.7209 296804 35 261.5150 63.3675 300 301 239 301 14 32.3588 2.1144 34 33 32.5000 33 True 77542952 27.6939 296472 31 261.5525 63.2080 300 301 239.5000 301 15.5000 32.3719 2.0832 34 33 32.5000 33
Staph-C48 gold passed all cutoffs 2800000 Staphylococcus aureus paired-end paired-end saureus 87 36 2667717 302565 74103 35918 802 169551 6 0 34.57 15.19 17.59 32.65 0.00 0.00 0 10 26 35 0.00 27.78 72.22 97.22 true true 2447 4 58 533132226 190.4044 1862878 35 286.1875 39.8344 301 301 300 301 2 32.1526 2.2654 34 33 32.5000 33 True 279999789 100.0 978704 31 286.0925 40.0067 301 301 300 301 15 32.1642 2.2335 34 33 32.5000 33
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