shinwachi
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| storage: | |
| filesystem: | |
| config: | |
| base_dir: | |
| "/tmp/" | |
| execution: | |
| multiprocess: | |
| config: | |
| max_concurrent: 0 # max cpu | |
| solids: |
shinwachi
/ gist:5db30bbf50327a51b8b1d4aef67cf0b1
Created
September 3, 2020 05:26
dagster intallation
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| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh # --no-check-certificate (don't do this if you can help it) | |
| chmod +x Miniconda3-latest-Linux-x86_64.sh | |
| ./Miniconda3-latest-Linux-x86_64.sh -b | |
| conda config --set ssl_verify no | |
| conda install dagster dagit -y |
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| # (log in) | |
| sudo su | |
| apt-get update | |
| curl -fsSL https://download.docker.com/linux/ubuntu/gpg | apt-key add - | |
| add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu $(lsb_release -cs) stable" | |
| apt-get update | |
| apt-get install -y docker-ce | |
| exit | |
| sudo usermod -aG docker $USER | |
| exit |
shinwachi
/ gist:a6fb30619c1ddbefbeb3ed78f3774320
Created
August 22, 2020 06:09
detect missing knime node
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| # find all knime nodes to install | |
| find . -name "settings.xml" -printf "\"%p\" " | xargs grep 'node-feature-symbolic-name' | grep -oP '.*value="\K[^\"]+' | sort | uniq | |
| # find all installed nodes | |
| ./knime -application org.eclipse.equinox.p2.director -nosplash -consolelog -listInstalledRoots | sort | |
| # find differences between the two | |
| comm x y |
shinwachi
/ gist:55b3721f41ea3ecbfa3e550fa0dad9d3
Created
August 22, 2020 04:17
equinox p2 director example
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| ./knime -application org.eclipse.equinox.p2.director -nosplash -consolelog -r 'jar:file:/knime/knimoe_220.zip!/' -i com.ccg_obsolete.feature.group,com.chemcomp.feature.group,com.ccg_ROW.feature.group -d $(pwd) | |
| # ./knime -application org.eclipse.equinox.p2.director -nosplash -help | |
| CompilerOracle: exclude javax/swing/text/GlyphView.getBreakSpot | |
| -help | -h | -? | |
| Prints this command line help information. | |
| -list | -l [ <comma separated list> ] | |
| Lists all IU's found in the given repositories. IUs can optionally be listed. Each entry in the list is in the form <id> [ '/' <version> ]. |
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| ''' | |
| with runt [(0, 2000), (2000, 4000), (4000, 6000), (6000, 7000)] | |
| no runt [(0, 2000), (2000, 4000), (4000, 6000)] | |
| [{'x': (0, 2000), 'y': (0, 2100), 'idx_xy': (0, 0)}, | |
| {'x': (2000, 4000), 'y': (0, 2100), 'idx_xy': (1, 0)}, | |
| {'x': (4000, 6000), 'y': (0, 2100), 'idx_xy': (2, 0)}, | |
| {'x': (0, 2000), 'y': (2100, 4200), 'idx_xy': (0, 1)}, | |
| {'x': (2000, 4000), 'y': (2100, 4200), 'idx_xy': (1, 1)}, | |
| {'x': (4000, 6000), 'y': (2100, 4200), 'idx_xy': (2, 1)}, | |
| {'x': (0, 2000), 'y': (4200, 6300), 'idx_xy': (0, 2)}, |
shinwachi
/ gist:44823769720fef142907a15087571648
Created
August 17, 2020 22:30
Fiji jython script to save particle analysis summary
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| Implementation of soultion listed here: https://forum.image.sc/t/solved-save-summary-in-headlessmode/26606/4 |