t-oginogin · August 10, 2014 00:28
diff --git a/docker b/docker
 export TMPDIR=/data/tmp
diff --git a/file0.txt b/file0.txt
 sudo mkdir /data
diff --git a/file1.txt b/file1.txt
 sudo /usr/share/google/safe_format_and_mount -m "mkfs.ext4 -F" /dev/disk/by-id/google-disk-1 /data
diff --git a/file10.txt b/file10.txt
 sudo mkdir /data/ngs
diff --git a/file11.txt b/file11.txt
 sudo docker run -it --name chef -v /data/ngs:/ngs t.oginogin/chef /bin/bash
diff --git a/file12.txt b/file12.txt
 su - ubuntu
diff --git a/file13.txt b/file13.txt
 scp -o UserKnownHostsFile=/dev/null -o CheckHostIP=no -o StrictHostKeyChecking=no -i $HOME/.ssh/google_compute_engine vicuna.zip $USER@TYPE-GOOGLE-COMPUTE-ENGINE-PUBLIC-IP-HERE:/home/$USER
diff --git a/file14.txt b/file14.txt
 sudo mkdir /data/ngs/tmp
 sudo mv ~/vicuna.zip /data/ngs/tmp/
diff --git a/file15.txt b/file15.txt
 sudo git clone https://github.com/t-oginogin/ngs_recipes.git /ngs/ngs_recipes
diff --git a/file16.txt b/file16.txt
 sudo mkdir /ngs/chef-solo
diff --git a/file17.txt b/file17.txt
 cd /ngs/ngs_recipes
 sudo chef-solo -c solo.rb -j ./localhost.json
diff --git a/file18.txt b/file18.txt
 exit
 exit
diff --git a/file19.txt b/file19.txt
 sudo docker commit chef t.oginogin/ngs
diff --git a/file2.txt b/file2.txt
 sudo /usr/share/google/safe_format_and_mount /dev/disk/by-id/google-disk-1 /data
diff --git a/file20.txt b/file20.txt
 sudo docker run -it --name ngs  -v /data/ngs:/ngs t.oginogin/ngs /bin/bash
diff --git a/file21.txt b/file21.txt
 su - ubuntu
diff --git a/file22.txt b/file22.txt
 bwa
 bowtie
 bowtie2
 samtools
 vicuna-omp-v1.0
diff --git a/file3.txt b/file3.txt
 sudo df -h
diff --git a/file4.txt b/file4.txt
 sudo mkdir /data/tmp
diff --git a/file5.txt b/file5.txt
 sudo yum -y install http://dl.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-8.noarch.rpm
 sudo yum -y install docker-io
 sudo service docker start
 sudo chkconfig docker on
diff --git a/file7.txt b/file7.txt
 sudo service docker restart
diff --git a/file8.txt b/file8.txt
 cd /data/
 sudo yum install curl
 sudo curl -o Dockerfile https://raw.githubusercontent.com/t-oginogin/dockerfiles/master/ubuntu/Dockerfile_chef
diff --git a/file9.txt b/file9.txt
 sudo docker build -t t.oginogin/chef .
	cd /ngs/ngs_recipes
	sudo chef-solo -c solo.rb -j ./localhost.json
	sudo yum -y install http://dl.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-8.noarch.rpm
	sudo yum -y install docker-io
	sudo service docker start
	sudo chkconfig docker on
	cd /data/
	sudo yum install curl
	sudo curl -o Dockerfile https://raw.githubusercontent.com/t-oginogin/dockerfiles/master/ubuntu/Dockerfile_chef