Skip to content

Instantly share code, notes, and snippets.

@will-moore
Created March 7, 2026 21:25
Show Gist options
  • Select an option

  • Save will-moore/75a7f0de5be0f7b4202d5f0229cadcc9 to your computer and use it in GitHub Desktop.

Select an option

Save will-moore/75a7f0de5be0f7b4202d5f0229cadcc9 to your computer and use it in GitHub Desktop.
{
"version": 9,
"panels": [
{
"x": 32.776939633609516,
"y": 299.60384546911166,
"width": 157,
"height": 160.5839416058394,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [
{
"text": "LaminB1",
"size": "18",
"position": "topleft",
"color": "0000FF"
},
{
"text": "Dapi",
"size": "18",
"position": "topleft",
"color": "FFFF00"
}
],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr",
"name": "6001240.zarr",
"sizeZ": 236,
"theZ": 118,
"sizeT": 1,
"theT": 0,
"channels": [
{
"active": true,
"coefficient": 1,
"color": "0000FF",
"family": "linear",
"inverted": false,
"label": "LaminB1",
"window": { "end": 1500, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "FFFF00",
"family": "linear",
"inverted": false,
"label": "Dapi",
"window": { "end": 1500, "max": 65535, "min": 0, "start": 0 }
}
],
"orig_width": 271,
"orig_height": 275,
"pixelsType": "uint16",
"zarr": {
"multiscales": [
{
"axes": [
{ "name": "c", "type": "channel" },
{ "name": "z", "type": "space", "unit": "micrometer" },
{ "name": "y", "type": "space", "unit": "micrometer" },
{ "name": "x", "type": "space", "unit": "micrometer" }
],
"datasets": [
{
"coordinateTransformations": [
{
"scale": [
1, 0.5002025531914894, 0.3603981534640209,
0.3603981534640209
],
"type": "scale"
}
],
"path": "0"
},
{
"coordinateTransformations": [
{
"scale": [
1, 0.5002025531914894, 0.7207963069280418,
0.7207963069280418
],
"type": "scale"
}
],
"path": "1"
},
{
"coordinateTransformations": [
{
"scale": [
1, 0.5002025531914894, 1.4415926138560835,
1.4415926138560835
],
"type": "scale"
}
],
"path": "2"
}
],
"version": "0.4"
}
],
"arrays": {
"0": {
"chunks": [1, 1, 275, 271],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [2, 236, 275, 271],
"zarr_format": 2
},
"1": {
"chunks": [1, 1, 137, 135],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [2, 236, 137, 135],
"zarr_format": 2
},
"2": {
"chunks": [1, 1, 68, 67],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [2, 236, 68, 67],
"zarr_format": 2
}
}
}
},
{
"x": 17.591322267118517,
"y": 74.21611062882681,
"width": 180.45352272222806,
"height": 154.1638724921538,
"zoom": 161,
"dx": -301.7739130434783,
"dy": 113.16521739130434,
"labels": [
{
"text": "H2B-eGFP",
"size": "21",
"position": "topleft",
"color": "00FF00"
},
{
"text": "myr-tdTomato",
"size": "21",
"position": "topleft",
"color": "FF0000"
}
],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0044A/4007801.zarr",
"name": "4007801.zarr",
"sizeZ": 988,
"theZ": 430,
"sizeT": 532,
"theT": 39,
"channels": [
{
"active": true,
"coefficient": 1,
"color": "00FF00",
"family": "linear",
"inverted": false,
"label": "H2B-eGFP",
"window": { "end": 1093, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "FF0000",
"family": "linear",
"inverted": false,
"label": "myr-tdTomato",
"window": { "end": 439, "max": 65535, "min": 0, "start": 0 }
}
],
"orig_width": 2169,
"orig_height": 2048,
"pixelsType": "uint16",
"zarr": {
"multiscales": [
{
"axes": [
{ "name": "t", "type": "time" },
{ "name": "c", "type": "channel" },
{ "name": "z", "type": "space", "unit": "micrometer" },
{ "name": "y", "type": "space", "unit": "micrometer" },
{ "name": "x", "type": "space", "unit": "micrometer" }
],
"datasets": [
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 1, 1], "type": "scale" }
],
"path": "0"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 2, 2], "type": "scale" }
],
"path": "1"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 4, 4], "type": "scale" }
],
"path": "2"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 8, 8], "type": "scale" }
],
"path": "3"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 16, 16], "type": "scale" }
],
"path": "4"
}
],
"metadata": {
"method": "loci.common.image.SimpleImageScaler",
"version": "Bio-Formats 6.9.1"
},
"version": "0.4"
}
],
"arrays": {
"0": {
"chunks": [1, 1, 1, 1024, 1024],
"compressor": {
"clevel": 5,
"blocksize": 0,
"shuffle": 1,
"cname": "lz4",
"id": "blosc"
},
"dtype": ">u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [532, 2, 988, 2048, 2169],
"dimension_separator": "/",
"zarr_format": 2
},
"1": {
"chunks": [1, 1, 1, 1024, 1024],
"compressor": {
"clevel": 5,
"blocksize": 0,
"shuffle": 1,
"cname": "lz4",
"id": "blosc"
},
"dtype": ">u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [532, 2, 988, 1024, 1084],
"dimension_separator": "/",
"zarr_format": 2
},
"2": {
"chunks": [1, 1, 1, 512, 542],
"compressor": {
"clevel": 5,
"blocksize": 0,
"shuffle": 1,
"cname": "lz4",
"id": "blosc"
},
"dtype": ">u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [532, 2, 988, 512, 542],
"dimension_separator": "/",
"zarr_format": 2
},
"3": {
"chunks": [1, 1, 1, 256, 271],
"compressor": {
"clevel": 5,
"blocksize": 0,
"shuffle": 1,
"cname": "lz4",
"id": "blosc"
},
"dtype": ">u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [532, 2, 988, 256, 271],
"dimension_separator": "/",
"zarr_format": 2
},
"4": {
"chunks": [1, 1, 1, 128, 135],
"compressor": {
"clevel": 5,
"blocksize": 0,
"shuffle": 1,
"cname": "lz4",
"id": "blosc"
},
"dtype": ">u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [532, 2, 988, 128, 135],
"dimension_separator": "/",
"zarr_format": 2
}
}
}
},
{
"x": 31.08678861788615,
"y": 482.6662931054629,
"width": 297.18408647711055,
"height": 175.42303934270956,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0048A/9846152.zarr",
"name": "/",
"sizeZ": 91,
"theZ": 45,
"sizeT": 1,
"theT": 0,
"channels": [
{
"active": true,
"coefficient": 1,
"color": "FF0000",
"family": "linear",
"inverted": false,
"label": "0",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "00FF00",
"family": "linear",
"inverted": false,
"label": "1",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "0000FF",
"family": "linear",
"inverted": false,
"label": "2",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
}
],
"orig_width": 19120,
"orig_height": 13350,
"pixelsType": "uint16",
"zarr": {
"multiscales": [
{
"axes": [
{ "name": "c", "type": "channel" },
{ "name": "z", "type": "space" },
{ "name": "y", "type": "space" },
{ "name": "x", "type": "space" }
],
"datasets": [
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 1], "type": "scale" }
],
"path": "0"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 2, 2], "type": "scale" }
],
"path": "1"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 4, 4], "type": "scale" }
],
"path": "2"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 8, 8], "type": "scale" }
],
"path": "3"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 16, 16], "type": "scale" }
],
"path": "4"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 32, 32], "type": "scale" }
],
"path": "5"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 64, 64], "type": "scale" }
],
"path": "6"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 128, 128], "type": "scale" }
],
"path": "7"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 256, 256], "type": "scale" }
],
"path": "8"
}
],
"name": "/",
"version": "0.4"
}
],
"arrays": {
"0": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 13350, 19120],
"zarr_format": 2
},
"1": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 6675, 9560],
"zarr_format": 2
},
"2": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 3337, 4780],
"zarr_format": 2
},
"3": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 1668, 2390],
"zarr_format": 2
},
"4": {
"chunks": [1, 1, 834, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 834, 1195],
"zarr_format": 2
},
"5": {
"chunks": [1, 1, 417, 597],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 417, 597],
"zarr_format": 2
},
"6": {
"chunks": [1, 1, 208, 298],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 208, 298],
"zarr_format": 2
},
"7": {
"chunks": [1, 1, 104, 149],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 104, 149],
"zarr_format": 2
},
"8": {
"chunks": [1, 1, 52, 74],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 52, 74],
"zarr_format": 2
}
}
},
"shapes": [
{
"type": "Rectangle",
"strokeWidth": 2,
"strokeColor": "#FFFFFF",
"x": 6376.664367816092,
"y": 3189.0643678160914,
"width": 2557.4712643678163,
"height": 2557.4712643678163,
"id": 42701259,
"rotation": 360
},
{
"type": "Rectangle",
"strokeWidth": 2,
"strokeColor": "#FFFFFF",
"x": 12107.241379310344,
"y": 3646.954022988506,
"width": 2557.4712643678163,
"height": 2557.4712643678163,
"id": 51069488,
"rotation": 360
}
]
},
{
"x": 31.08678861788615,
"y": 659.0893324481724,
"width": 145.35051831253077,
"height": 145.35051831253077,
"zoom": 522,
"dx": 1904.6000000000004,
"dy": 2207.2000000000007,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0048A/9846152.zarr",
"name": "/",
"sizeZ": 91,
"theZ": 45,
"sizeT": 1,
"theT": 0,
"channels": [
{
"active": true,
"coefficient": 1,
"color": "FF0000",
"family": "linear",
"inverted": false,
"label": "0",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "00FF00",
"family": "linear",
"inverted": false,
"label": "1",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "0000FF",
"family": "linear",
"inverted": false,
"label": "2",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
}
],
"orig_width": 19120,
"orig_height": 13350,
"pixelsType": "uint16",
"zarr": {
"multiscales": [
{
"axes": [
{ "name": "c", "type": "channel" },
{ "name": "z", "type": "space" },
{ "name": "y", "type": "space" },
{ "name": "x", "type": "space" }
],
"datasets": [
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 1], "type": "scale" }
],
"path": "0"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 2, 2], "type": "scale" }
],
"path": "1"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 4, 4], "type": "scale" }
],
"path": "2"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 8, 8], "type": "scale" }
],
"path": "3"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 16, 16], "type": "scale" }
],
"path": "4"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 32, 32], "type": "scale" }
],
"path": "5"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 64, 64], "type": "scale" }
],
"path": "6"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 128, 128], "type": "scale" }
],
"path": "7"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 256, 256], "type": "scale" }
],
"path": "8"
}
],
"name": "/",
"version": "0.4"
}
],
"arrays": {
"0": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 13350, 19120],
"zarr_format": 2
},
"1": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 6675, 9560],
"zarr_format": 2
},
"2": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 3337, 4780],
"zarr_format": 2
},
"3": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 1668, 2390],
"zarr_format": 2
},
"4": {
"chunks": [1, 1, 834, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 834, 1195],
"zarr_format": 2
},
"5": {
"chunks": [1, 1, 417, 597],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 417, 597],
"zarr_format": 2
},
"6": {
"chunks": [1, 1, 208, 298],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 208, 298],
"zarr_format": 2
},
"7": {
"chunks": [1, 1, 104, 149],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 104, 149],
"zarr_format": 2
},
"8": {
"chunks": [1, 1, 52, 74],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 52, 74],
"zarr_format": 2
}
}
},
"shapes": [],
"insetRoiId": 42701259
},
{
"x": 177.4373069304169,
"y": 659.0893324481724,
"width": 145.35051831253077,
"height": 145.35051831253077,
"zoom": 522,
"dx": -3825.9770114942526,
"dy": 1749.3103448275863,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": false,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0048A/9846152.zarr",
"name": "/",
"sizeZ": 91,
"theZ": 45,
"sizeT": 1,
"theT": 0,
"channels": [
{
"active": true,
"coefficient": 1,
"color": "FF0000",
"family": "linear",
"inverted": false,
"label": "0",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "00FF00",
"family": "linear",
"inverted": false,
"label": "1",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
},
{
"active": true,
"coefficient": 1,
"color": "0000FF",
"family": "linear",
"inverted": false,
"label": "2",
"window": { "end": 25000, "max": 65535, "min": 0, "start": 0 }
}
],
"orig_width": 19120,
"orig_height": 13350,
"pixelsType": "uint16",
"zarr": {
"multiscales": [
{
"axes": [
{ "name": "c", "type": "channel" },
{ "name": "z", "type": "space" },
{ "name": "y", "type": "space" },
{ "name": "x", "type": "space" }
],
"datasets": [
{
"coordinateTransformations": [
{ "scale": [1, 1, 1, 1], "type": "scale" }
],
"path": "0"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 2, 2], "type": "scale" }
],
"path": "1"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 4, 4], "type": "scale" }
],
"path": "2"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 8, 8], "type": "scale" }
],
"path": "3"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 16, 16], "type": "scale" }
],
"path": "4"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 32, 32], "type": "scale" }
],
"path": "5"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 64, 64], "type": "scale" }
],
"path": "6"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 128, 128], "type": "scale" }
],
"path": "7"
},
{
"coordinateTransformations": [
{ "scale": [1, 1, 256, 256], "type": "scale" }
],
"path": "8"
}
],
"name": "/",
"version": "0.4"
}
],
"arrays": {
"0": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 13350, 19120],
"zarr_format": 2
},
"1": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 6675, 9560],
"zarr_format": 2
},
"2": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 3337, 4780],
"zarr_format": 2
},
"3": {
"chunks": [1, 1, 1024, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 1668, 2390],
"zarr_format": 2
},
"4": {
"chunks": [1, 1, 834, 1024],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 834, 1195],
"zarr_format": 2
},
"5": {
"chunks": [1, 1, 417, 597],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 417, 597],
"zarr_format": 2
},
"6": {
"chunks": [1, 1, 208, 298],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 208, 298],
"zarr_format": 2
},
"7": {
"chunks": [1, 1, 104, 149],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 104, 149],
"zarr_format": 2
},
"8": {
"chunks": [1, 1, 52, 74],
"compressor": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"id": "blosc",
"shuffle": 1
},
"dimension_separator": "/",
"dtype": "<u2",
"fill_value": 0,
"filters": null,
"order": "C",
"shape": [3, 91, 52, 74],
"zarr_format": 2
}
}
},
"shapes": [],
"insetRoiId": 51069488
},
{
"x": 283.1022701444024,
"y": 77.59274883519919,
"width": 246.41414141414134,
"height": 340.4438846136183,
"zoom": 100,
"dx": 0,
"dy": 0,
"labels": [],
"deltaT": [],
"rotation": 0,
"selected": true,
"pixel_size_x_symbol": "µm",
"pixel_size_x_unit": "MICROMETER",
"rotation_symbol": "°",
"max_export_dpi": 1000,
"vertical_flip": false,
"horizontal_flip": false,
"imageId": "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.5/idr0066/ExpD_chicken_embryo_MIP.ome.zarr",
"name": "/",
"sizeZ": 1,
"theZ": 0,
"sizeT": 1,
"theT": 0,
"channels": [
{
"label": "Cy3",
"active": true,
"color": "FFFFFF",
"window": { "min": 0, "max": 255, "start": 0, "end": 55 }
}
],
"orig_width": 6510,
"orig_height": 8978,
"pixelsType": "uint64",
"zarr": {
"multiscales": [
{
"axes": [
{ "name": "y", "type": "space", "unit": "micrometer" },
{ "name": "x", "type": "space", "unit": "micrometer" }
],
"datasets": [
{
"coordinateTransformations": [
{ "scale": [1.6, 1.6], "type": "scale" }
],
"path": "0"
},
{
"coordinateTransformations": [
{ "scale": [3.2, 3.2], "type": "scale" }
],
"path": "1"
},
{
"coordinateTransformations": [
{ "scale": [6.4, 6.4], "type": "scale" }
],
"path": "2"
},
{
"coordinateTransformations": [
{ "scale": [12.8, 12.8], "type": "scale" }
],
"path": "3"
},
{
"coordinateTransformations": [
{ "scale": [25.6, 25.6], "type": "scale" }
],
"path": "4"
},
{
"coordinateTransformations": [
{ "scale": [51.2, 51.2], "type": "scale" }
],
"path": "5"
},
{
"coordinateTransformations": [
{ "scale": [102.4, 102.4], "type": "scale" }
],
"path": "6"
},
{
"coordinateTransformations": [
{ "scale": [204.8, 204.8], "type": "scale" }
],
"path": "7"
}
],
"name": "/"
}
],
"arrays": {
"0": { "shape": [8978, 6510], "dtype": "uint8" },
"1": { "shape": [4489, 3255], "dtype": "uint8" },
"2": { "shape": [2244, 1627], "dtype": "uint8" },
"3": { "shape": [1122, 813], "dtype": "uint8" },
"4": { "shape": [561, 406], "dtype": "uint8" },
"5": { "shape": [280, 203], "dtype": "uint8" },
"6": { "shape": [140, 101], "dtype": "uint8" },
"7": { "shape": [70, 50], "dtype": "uint8" }
},
"zarr_version": 3,
"version": "0.5"
},
"pixel_size_x": 1.6,
"pixel_size_y": 1.6,
"pixel_size_y_unit": "MICROMETER",
"pixel_size_y_symbol": "µm"
}
],
"paper_width": 595,
"paper_height": 842,
"page_size": "A4",
"page_count": 1,
"paper_spacing": 50,
"page_col_count": 1,
"height_mm": 297,
"width_mm": 210,
"orientation": "vertical",
"legend": "",
"legend_collapsed": true,
"page_color": "FFFFFF",
"figureName": "OME-Zarr demo"
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment