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| [santuz@sablons:conda (master=)]$ conda-build -c bioconda -c conda-forge pbxplore -c anaconda | |
| Adding in variants from internal_defaults | |
| INFO:conda_build.variants:Adding in variants from internal_defaults | |
| Attempting to finalize metadata for pbxplore | |
| INFO:conda_build.metadata:Attempting to finalize metadata for pbxplore | |
| Solving environment: ...working... done | |
| Solving environment: ...working... done | |
| BUILD START: ['pbxplore-1.3.8-py36_0.tar.bz2'] | |
| Solving environment: ...working... done | |
| Solving environment: ...working... done |
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| (pbxplore)[santuz@temple:PBxplore (master=)]$ pycodestyle | |
| ./setup.py:25:80: E501 line too long (84 > 79 characters) | |
| ./setup.py:64:29: E231 missing whitespace after ':' | |
| ./pbxplore/PB.py:59:11: E201 whitespace after '[' | |
| ./pbxplore/PB.py:65:11: E201 whitespace after '[' | |
| ./pbxplore/PB.py:131:80: E501 line too long (87 > 79 characters) | |
| ./pbxplore/__init__.py:44:5: E265 block comment should start with '# ' | |
| ./pbxplore/assignment.py:51:41: E202 whitespace before ']' | |
| ./pbxplore/assignment.py:52:41: E202 whitespace before ']' | |
| ./pbxplore/assignment.py:69:80: E501 line too long (89 > 79 characters) |
HubLot
/ weblogo.ipynb
Last active
September 25, 2015 16:14
Test to generate images from weblogo API
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| { | |
| "cells": [ | |
| { | |
| "cell_type": "markdown", | |
| "metadata": {}, | |
| "source": [ | |
| "# Comparison between hierarchical clustering in R and Python" | |
| ] | |
| }, | |
| { |
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| { | |
| "cells": [ | |
| { | |
| "cell_type": "code", | |
| "execution_count": 1, | |
| "metadata": { | |
| "collapsed": false | |
| }, | |
| "outputs": [], | |
| "source": [ |
HubLot
/ HClust with ward on psi_md_traj_all.PB.fasta
Last active
August 29, 2015 14:20
Test scikit-learn VS R clustering for PBxplore
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| { | |
| "cells": [ | |
| { | |
| "cell_type": "code", | |
| "execution_count": 21, | |
| "metadata": { | |
| "collapsed": false | |
| }, | |
| "outputs": [], | |
| "source": [ |