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Created February 21, 2017 10:08
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pycodestyle log on Pbxplore
(pbxplore)[santuz@temple:PBxplore (master=)]$ pycodestyle
./setup.py:25:80: E501 line too long (84 > 79 characters)
./setup.py:64:29: E231 missing whitespace after ':'
./pbxplore/PB.py:59:11: E201 whitespace after '['
./pbxplore/PB.py:65:11: E201 whitespace after '['
./pbxplore/PB.py:131:80: E501 line too long (87 > 79 characters)
./pbxplore/__init__.py:44:5: E265 block comment should start with '# '
./pbxplore/assignment.py:51:41: E202 whitespace before ']'
./pbxplore/assignment.py:52:41: E202 whitespace before ']'
./pbxplore/assignment.py:69:80: E501 line too long (89 > 79 characters)
./pbxplore/assignment.py:71:80: E501 line too long (89 > 79 characters)
./pbxplore/io/__init__.py:29:80: E501 line too long (81 > 79 characters)
./pbxplore/io/write.py:32:80: E501 line too long (88 > 79 characters)
./pbxplore/io/write.py:52:80: E501 line too long (85 > 79 characters)
./pbxplore/structure/PDB.py:17:80: E501 line too long (94 > 79 characters)
./pbxplore/structure/PDB.py:42:80: E501 line too long (100 > 79 characters)
./pbxplore/structure/loader.py:12:1: E265 block comment should start with '# '
./pbxplore/structure/loader.py:35:80: E501 line too long (90 > 79 characters)
./pbxplore/structure/loader.py:42:5: E265 block comment should start with '# '
./pbxplore/structure/loader.py:55:9: E265 block comment should start with '# '
./pbxplore/structure/loader.py:65:80: E501 line too long (82 > 79 characters)
./pbxplore/structure/structure.py:100:9: E722 do not use bare except'
./pbxplore/structure/structure.py:101:80: E501 line too long (80 > 79 characters)
./pbxplore/structure/structure.py:112:9: E722 do not use bare except'
./pbxplore/structure/structure.py:141:80: E501 line too long (90 > 79 characters)
./pbxplore/structure/structure.py:263:80: E501 line too long (83 > 79 characters)
./pbxplore/structure/structure.py:267:80: E501 line too long (104 > 79 characters)
./pbxplore/structure/structure.py:268:80: E501 line too long (104 > 79 characters)
./pbxplore/structure/structure.py:269:80: E501 line too long (104 > 79 characters)
./pbxplore/structure/structure.py:270:80: E501 line too long (104 > 79 characters)
./pbxplore/structure/structure.py:271:80: E501 line too long (104 > 79 characters)
./pbxplore/structure/structure.py:281:80: E501 line too long (133 > 79 characters)
./pbxplore/structure/structure.py:297:80: E501 line too long (81 > 79 characters)
./pbxplore/structure/structure.py:303:59: E202 whitespace before ']'
./pbxplore/structure/structure.py:304:53: E202 whitespace before ']'
./pbxplore/structure/structure.py:304:59: E202 whitespace before ']'
./pbxplore/structure/structure.py:305:53: E202 whitespace before ']'
./pbxplore/structure/structure.py:306:53: E202 whitespace before ']'
./pbxplore/structure/structure.py:306:59: E202 whitespace before ']'
./pbxplore/structure/structure.py:311:17: E722 do not use bare except'
./pbxplore/structure/structure.py:315:53: E202 whitespace before ']'
./pbxplore/structure/structure.py:315:59: E202 whitespace before ']'
./pbxplore/structure/structure.py:316:53: E202 whitespace before ']'
./pbxplore/structure/structure.py:317:53: E202 whitespace before ']'
./pbxplore/structure/structure.py:317:59: E202 whitespace before ']'
./pbxplore/structure/structure.py:318:59: E202 whitespace before ']'
./pbxplore/structure/structure.py:323:17: E722 do not use bare except'
./pbxplore/structure/structure.py:388:5: E303 too many blank lines (2)
./pbxplore/structure/structure.py:396:5: E722 do not use bare except'
./pbxplore/demo/__init__.py:23:15: E225 missing whitespace around operator
./pbxplore/demo/__init__.py:36:1: E302 expected 2 blank lines, found 1
./pbxplore/scripts/PBassign.py:80:80: E501 line too long (100 > 79 characters)
./pbxplore/scripts/PBassign.py:81:80: E501 line too long (82 > 79 characters)
./pbxplore/scripts/PBassign.py:121:80: E501 line too long (97 > 79 characters)
./pbxplore/scripts/PBassign.py:122:80: E501 line too long (97 > 79 characters)
./pbxplore/scripts/PBassign.py:134:1: E305 expected 2 blank lines after class or function definition, found 1
./pbxplore/scripts/PBdata.py:23:1: E302 expected 2 blank lines, found 1
./pbxplore/scripts/PBdata.py:55:1: W391 blank line at end of file
./pbxplore/scripts/PBstat.py:29:1: E722 do not use bare except'
./pbxplore/scripts/PBstat.py:61:80: E501 line too long (81 > 79 characters)
./pbxplore/scripts/PBstat.py:65:80: E501 line too long (80 > 79 characters)
./pbxplore/scripts/PBstat.py:70:80: E501 line too long (84 > 79 characters)
./pbxplore/scripts/PBstat.py:71:80: E501 line too long (94 > 79 characters)
./pbxplore/scripts/PBstat.py:72:80: E501 line too long (80 > 79 characters)
./pbxplore/scripts/PBstat.py:73:80: E501 line too long (88 > 79 characters)
./pbxplore/scripts/PBstat.py:74:80: E501 line too long (82 > 79 characters)
./pbxplore/scripts/PBstat.py:75:80: E501 line too long (100 > 79 characters)
./pbxplore/scripts/PBstat.py:81:80: E501 line too long (88 > 79 characters)
./pbxplore/scripts/PBstat.py:83:80: E501 line too long (88 > 79 characters)
./pbxplore/scripts/PBstat.py:103:80: E501 line too long (85 > 79 characters)
./pbxplore/scripts/PBstat.py:107:1: E302 expected 2 blank lines, found 1
./pbxplore/scripts/PBstat.py:109:80: E501 line too long (82 > 79 characters)
./pbxplore/scripts/PBstat.py:143:1: E302 expected 2 blank lines, found 1
./pbxplore/scripts/PBstat.py:154:80: E501 line too long (90 > 79 characters)
./pbxplore/scripts/PBstat.py:156:80: E501 line too long (96 > 79 characters)
./pbxplore/scripts/PBstat.py:165:80: E501 line too long (91 > 79 characters)
./pbxplore/scripts/PBstat.py:174:80: E501 line too long (96 > 79 characters)
./pbxplore/scripts/PBstat.py:187:80: E501 line too long (87 > 79 characters)
./pbxplore/scripts/PBstat.py:192:80: E501 line too long (94 > 79 characters)
./pbxplore/scripts/PBstat.py:202:80: E501 line too long (89 > 79 characters)
./pbxplore/analysis/__init__.py:45:80: E501 line too long (85 > 79 characters)
./pbxplore/analysis/compare.py:55:80: E501 line too long (90 > 79 characters)
./pbxplore/analysis/compare.py:90:80: E501 line too long (86 > 79 characters)
./pbxplore/analysis/count.py:94:5: E722 do not use bare except'
./pbxplore/analysis/count.py:113:5: E722 do not use bare except'
./pbxplore/analysis/neq.py:20:80: E501 line too long (86 > 79 characters)
./pbxplore/analysis/utils.py:59:80: E501 line too long (88 > 79 characters)
./pbxplore/analysis/utils.py:69:5: E303 too many blank lines (2)
./pbxplore/analysis/utils.py:69:80: E501 line too long (91 > 79 characters)
./pbxplore/analysis/utils.py:70:80: E501 line too long (84 > 79 characters)
./pbxplore/analysis/utils.py:94:80: E501 line too long (91 > 79 characters)
./pbxplore/analysis/utils.py:97:80: E501 line too long (94 > 79 characters)
./pbxplore/analysis/utils.py:109:80: E501 line too long (83 > 79 characters)
./pbxplore/analysis/visualization.py:53:80: E501 line too long (85 > 79 characters)
./pbxplore/analysis/visualization.py:71:80: E501 line too long (85 > 79 characters)
./pbxplore/analysis/visualization.py:86:80: E501 line too long (85 > 79 characters)
./pbxplore/analysis/visualization.py:107:80: E501 line too long (85 > 79 characters)
./pbxplore/analysis/visualization.py:112:80: E501 line too long (83 > 79 characters)
./pbxplore/analysis/visualization.py:139:80: E501 line too long (86 > 79 characters)
./pbxplore/analysis/visualization.py:151:80: E501 line too long (89 > 79 characters)
./pbxplore/analysis/visualization.py:153:80: E501 line too long (87 > 79 characters)
./pbxplore/analysis/visualization.py:185:80: E501 line too long (89 > 79 characters)
./pbxplore/analysis/visualization.py:192:80: E501 line too long (103 > 79 characters)
./pbxplore/analysis/visualization.py:194:80: E501 line too long (81 > 79 characters)
./pbxplore/analysis/visualization.py:221:80: E501 line too long (87 > 79 characters)
./pbxplore/analysis/visualization.py:225:80: E501 line too long (86 > 79 characters)
./pbxplore/analysis/visualization.py:228:80: E501 line too long (85 > 79 characters)
./pbxplore/analysis/visualization.py:234:80: E501 line too long (92 > 79 characters)
./pbxplore/analysis/visualization.py:251:80: E501 line too long (95 > 79 characters)
./pbxplore/tests/__init__.py:26:5: E722 do not use bare except'
./pbxplore/tests/test_functions.py:40:80: E501 line too long (82 > 79 characters)
./pbxplore/tests/test_functions.py:51:49: E202 whitespace before ')'
./pbxplore/tests/test_functions.py:61:49: E202 whitespace before ')'
./pbxplore/tests/test_functions.py:62:49: E202 whitespace before ')'
./pbxplore/tests/test_functions.py:124:15: E128 continuation line under-indented for visual indent
./pbxplore/tests/test_functions.py:124:80: E501 line too long (82 > 79 characters)
./pbxplore/tests/test_functions.py:125:15: E128 continuation line under-indented for visual indent
./pbxplore/tests/test_functions.py:125:80: E501 line too long (83 > 79 characters)
./pbxplore/tests/test_functions.py:126:15: E128 continuation line under-indented for visual indent
./pbxplore/tests/test_functions.py:127:15: E128 continuation line under-indented for visual indent
./pbxplore/tests/test_functions.py:128:15: E128 continuation line under-indented for visual indent
./pbxplore/tests/test_functions.py:128:80: E501 line too long (82 > 79 characters)
./pbxplore/tests/test_functions.py:129:15: E128 continuation line under-indented for visual indent
./pbxplore/tests/test_functions.py:135:80: E501 line too long (124 > 79 characters)
./pbxplore/tests/test_functions.py:137:80: E501 line too long (124 > 79 characters)
./pbxplore/tests/test_functions.py:139:80: E501 line too long (124 > 79 characters)
./pbxplore/tests/test_functions.py:147:80: E501 line too long (90 > 79 characters)
./pbxplore/tests/test_functions.py:153:80: E501 line too long (113 > 79 characters)
./pbxplore/tests/test_functions.py:156:80: E501 line too long (113 > 79 characters)
./pbxplore/tests/test_functions.py:159:80: E501 line too long (114 > 79 characters)
./pbxplore/tests/test_functions.py:170:80: E501 line too long (114 > 79 characters)
./pbxplore/tests/test_functions.py:187:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:191:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:193:9: E265 block comment should start with '# '
./pbxplore/tests/test_functions.py:196:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:198:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:212:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:213:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:214:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:215:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:216:80: E501 line too long (100 > 79 characters)
./pbxplore/tests/test_functions.py:274:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:276:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:288:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:290:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:294:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:296:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:307:9: E265 block comment should start with '# '
./pbxplore/tests/test_functions.py:311:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:316:5: E303 too many blank lines (2)
./pbxplore/tests/test_functions.py:325:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:327:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:331:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:333:80: E501 line too long (96 > 79 characters)
./pbxplore/tests/test_functions.py:346:80: E501 line too long (97 > 79 characters)
./pbxplore/tests/test_functions.py:356:1: E305 expected 2 blank lines after class or function definition, found 1
./pbxplore/tests/test_regression.py:158:80: E501 line too long (90 > 79 characters)
./pbxplore/tests/test_regression.py:177:80: E501 line too long (81 > 79 characters)
./pbxplore/tests/test_regression.py:193:80: E501 line too long (87 > 79 characters)
./pbxplore/tests/test_regression.py:195:24: E127 continuation line over-indented for visual indent
./pbxplore/tests/test_regression.py:197:25: E127 continuation line over-indented for visual indent
./pbxplore/tests/test_regression.py:197:80: E501 line too long (80 > 79 characters)
./pbxplore/tests/test_regression.py:254:5: E303 too many blank lines (2)
./pbxplore/tests/test_regression.py:318:80: E501 line too long (80 > 79 characters)
./pbxplore/tests/test_regression.py:356:1: E303 too many blank lines (3)
./pbxplore/tests/test_regression.py:431:80: E501 line too long (84 > 79 characters)
./pbxplore/tests/test_regression.py:437:80: E501 line too long (84 > 79 characters)
./doc/source/conf.py:32:1: E265 block comment should start with '# '
./doc/source/conf.py:51:1: E265 block comment should start with '# '
./doc/source/conf.py:71:1: E265 block comment should start with '# '
./doc/source/conf.py:75:1: E265 block comment should start with '# '
./doc/source/conf.py:77:1: E265 block comment should start with '# '
./doc/source/conf.py:85:1: E265 block comment should start with '# '
./doc/source/conf.py:88:1: E265 block comment should start with '# '
./doc/source/conf.py:92:1: E265 block comment should start with '# '
./doc/source/conf.py:96:1: E265 block comment should start with '# '
./doc/source/conf.py:102:1: E265 block comment should start with '# '
./doc/source/conf.py:105:1: E265 block comment should start with '# '
./doc/source/conf.py:117:1: E265 block comment should start with '# '
./doc/source/conf.py:120:1: E265 block comment should start with '# '
./doc/source/conf.py:124:1: E265 block comment should start with '# '
./doc/source/conf.py:127:1: E265 block comment should start with '# '
./doc/source/conf.py:131:1: E265 block comment should start with '# '
./doc/source/conf.py:136:1: E265 block comment should start with '# '
./doc/source/conf.py:146:1: E265 block comment should start with '# '
./doc/source/conf.py:150:1: E265 block comment should start with '# '
./doc/source/conf.py:154:1: E265 block comment should start with '# '
./doc/source/conf.py:157:1: E265 block comment should start with '# '
./doc/source/conf.py:161:1: E265 block comment should start with '# '
./doc/source/conf.py:164:1: E265 block comment should start with '# '
./doc/source/conf.py:167:1: E265 block comment should start with '# '
./doc/source/conf.py:170:1: E265 block comment should start with '# '
./doc/source/conf.py:173:1: E265 block comment should start with '# '
./doc/source/conf.py:176:1: E265 block comment should start with '# '
./doc/source/conf.py:179:1: E265 block comment should start with '# '
./doc/source/conf.py:184:1: E265 block comment should start with '# '
./doc/source/conf.py:187:1: E265 block comment should start with '# '
./doc/source/conf.py:196:1: E122 continuation line missing indentation or outdented
./doc/source/conf.py:197:1: E122 continuation line missing indentation or outdented
./doc/source/conf.py:197:1: E265 block comment should start with '# '
./doc/source/conf.py:199:1: E122 continuation line missing indentation or outdented
./doc/source/conf.py:200:1: E122 continuation line missing indentation or outdented
./doc/source/conf.py:200:1: E265 block comment should start with '# '
./doc/source/conf.py:202:1: E122 continuation line missing indentation or outdented
./doc/source/conf.py:203:1: E122 continuation line missing indentation or outdented
./doc/source/conf.py:203:1: E265 block comment should start with '# '
./doc/source/conf.py:216:1: E265 block comment should start with '# '
./doc/source/conf.py:220:1: E265 block comment should start with '# '
./doc/source/conf.py:223:1: E265 block comment should start with '# '
./doc/source/conf.py:226:1: E265 block comment should start with '# '
./doc/source/conf.py:229:1: E265 block comment should start with '# '
./doc/source/conf.py:232:1: E265 block comment should start with '# '
./doc/source/conf.py:245:1: E265 block comment should start with '# '
./doc/source/conf.py:260:1: E265 block comment should start with '# '
./doc/source/conf.py:263:1: E265 block comment should start with '# '
./doc/source/conf.py:266:1: E265 block comment should start with '# '
./doc/source/conf.py:269:1: E265 block comment should start with '# '
./doc/source/pandoc_fix_img.py:11:24: E271 multiple spaces after keyword
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